Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0886 ATGAACTGTTTGTCTTTTCTTTTCTGCAAAAAGGGGTCTTCCTCAGCCACACAATCATCAGAAGTTGATATAGATTTTTCAGACATTGAGAATGTCAATCGTTACACTTACAAGGAATTGAAAATTGCCACCGAAGGATTTAGTCCAGCAAACAAGATAGGGGAGGGAGGTTTTGGATCAGTCTATAAGGGAAAGCTGAGAAATGATACTCTGGCTGCTATAAAGGTTTTGTCGGCTGAATCAAGACAAGGCGTCAAAGAGTTCTTGACAGAAATCAAAGTGATCAGTAGTATAGAGCATGAGAATCTAGTTAAGTTGTACGGATGCTGTGTGGAAGGAAACCATAGGATTTTGGTATATGAATATCATGAAAATAACAGCCTAGCACAAACACTTCTTGGTGGAGGTCATAGTAGCATCCAATTCAGTTGGGATGTCCGGCGAAACATTTGCATTGGTGTTGCCCGAGGCCTTGCGTTCCTTCATGACGTAGTTCAGCCACATATTATTCATAGAGACATTAAAGCAAGCAACATATTACTCGACAAAAGCCTCCAGCCTAAGATTTCAGATTTTGGCCTCGCAAAGCTTATTGCAGCAAACTTGACACATATTAGTACACTTGTTGCTGGTACAGCTGGCTATCTAGCTCCTGAATACGCAATTCGAAGTCAAGTGACAAGAAAATCCGATGTCTATAGCTTTGGAGTTCTGCTACTAGAAATTGTTAGTGGGAAGTGTAACACAAACAGACGTTTACCTGTGGGAGAACGATATCTTCTTGCAAATGCATGGGATTTGTATGAGAAAGGGGAGACGGAGAGTTTGGTGGATGTCTTTCTTGATGGAGAATTCGATGTTGAGGAGGCAATAAGGTTTTGTAAGATTGGTCTTCTTTGCACTCAGGACTCTCTTCAGCTCCGACCTTCTATGTCTGAGGTGCTCGACATGCTGATAGGTGAAACAGATGTGAATGAGGAGAAGATGGCAAAACCGGGCTTGGTATTTGAAATTATCGAAGCCAAAGAGCGAAGGAAACAGAAAGGGACGGCTGAAGTGGAAAATGCATCTTCTTCTTTGGTTGGTTCAGGGAGACAAGATGATTCATCTTTATCAGGAATCGCGGACTCTTTCGCTACCATGACCTTCACTTCGATTTACGACCGAAGCAATTGA 1176 0.4209 MNCLSFLFCKKGSSSATQSSEVDIDFSDIENVNRYTYKELKIATEGFSPANKIGEGGFGSVYKGKLRNDTLAAIKVLSAESRQGVKEFLTEIKVISSIEHENLVKLYGCCVEGNHRILVYEYHENNSLAQTLLGGGHSSIQFSWDVRRNICIGVARGLAFLHDVVQPHIIHRDIKASNILLDKSLQPKISDFGLAKLIAANLTHISTLVAGTAGYLAPEYAIRSQVTRKSDVYSFGVLLLEIVSGKCNTNRRLPVGERYLLANAWDLYEKGETESLVDVFLDGEFDVEEAIRFCKIGLLCTQDSLQLRPSMSEVLDMLIGETDVNEEKMAKPGLVFEIIEAKERRKQKGTAEVENASSSLVGSGRQDDSSLSGIADSFATMTFTSIYDRSN* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0886 391 PANTHER RECEPTOR-LIKE KINASE 3 377 - -
Lan5g0886 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Lan5g0886 391 SMART serkin_6 47 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g0886 391 MobiDBLite consensus disorder prediction 352 371 - -
Lan5g0886 391 Gene3D Phosphorylase Kinase; domain 1 17 122 - -
Lan5g0886 391 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Lan5g0886 391 ProSiteProfiles Protein kinase domain profile. 47 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g0886 391 CDD STKc_IRAK 53 318 - -
Lan5g0886 391 MobiDBLite consensus disorder prediction 347 371 - -
Lan5g0886 391 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 3 377 - -
Lan5g0886 391 Pfam Protein kinase domain 50 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g0886 391 Gene3D Transferase(Phosphotransferase) domain 1 124 332 - -
Lan5g0886 391 SUPERFAMILY Protein kinase-like (PK-like) 25 318 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0886 Lan-Chr5 21879641 21882654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0886 35 333 Receptor kinase-like Gene Family AT1G56120 55.853 1.70e-104 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lan5g0886 Pkinase 3.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0886 - - gmx:100797257 597.43