Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0880 ATGGCAGGAGTGGGACCCATATCACAGGACTGGGAGCCGGTGGTGATAAGGAAGAAGGCACCAAACGCTGCGGCCAAGAAAGATGAGAAGGCTGTGAACGCTGCTCGTCGTGCTGGCGCTGAGATTGAAACTGTCAAAAAATCAACTGCTGGGACAAACAGAGCGGCCTCTAGTAGCACTACTCTGAACACAAGGAAGCTTGATGAAGAAACTGAGAATCTTCACCATGAAAGGGTACCAACTGAGTTGAAGAAAGCCATCATGCAGGCTAGGCTGGAGAAAAAACTCACTCAAGCTCAACTGGCTCAGATAATTAACGAAAAGCCTCAGATTATACAGGAGTATGAATCTGGAAAAGCCATTCCAAATCAACAAATAATTGGAAAACTTGAGAGAGCTCTTGGTGCGAAACTGCGTGGAAAGAAGTGA 429 0.4662 MAGVGPISQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETVKKSTAGTNRAASSSTTLNTRKLDEETENLHHERVPTELKKAIMQARLEKKLTQAQLAQIINEKPQIIQEYESGKAIPNQQIIGKLERALGAKLRGKK* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0880 142 Gene3D - 71 142 IPR010982 GO:0003677
Lan5g0880 142 Coils Coil 87 107 - -
Lan5g0880 142 Pfam Multiprotein bridging factor 1 9 79 IPR013729 -
Lan5g0880 142 ProSiteProfiles Cro/C1-type HTH domain profile. 87 141 IPR001387 -
Lan5g0880 142 CDD HTH_XRE 85 135 IPR001387 -
Lan5g0880 142 SMART mbf_short4 86 141 IPR001387 -
Lan5g0880 142 MobiDBLite consensus disorder prediction 42 76 - -
Lan5g0880 142 SUPERFAMILY lambda repressor-like DNA-binding domains 81 138 IPR010982 GO:0003677
Lan5g0880 142 Pfam Helix-turn-helix 87 137 IPR001387 -
Lan5g0880 142 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 1 142 - -
Lan5g0880 142 PANTHER MULTIPROTEIN BRIDGING FACTOR 1B 1 142 - -
Lan5g0880 142 MobiDBLite consensus disorder prediction 46 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0880 Lan-Chr5 21796022 21815860 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Lan5g0880 MBF1 6.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0880 K03627 - jre:108984493 259.61