Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0879 ATGTCTCTAAGGAACGTCTTCCGCTCTCGCAAATTCTCTAGATCCTTCAAGGTAACCACCCCCAGTGACCCATCTTCCGCCGGCGAACGGAGCTCCGGCGAAGAATCGATACACTGCAATGCGTGGTCGAATATGTTGCCGGAGCTTCTCGGCGAGATTATACGGCGCGTGGAAGTCACCGAGGAGCAATGGCCGCACCGCCAAAACGTTGTAGCTTGCGCCTGTGTTTGTAAGCGGTGGAGAGACATCACGCGCCAGATCGTGCGTTCCCATTCTCATAAGGGCACAATCACTTTTCCCTCTTGCCTTAAACAGCCGGGACCACGAGACCTTCCCCACCAATGCCTTATAAAGCGGAACAAGAAAACGTCAACGTTTTACCTCTATCTTGCCCTTACACCATCATTCACAGATAAAGGGAAGTTTCTGTTAGCCGGTAGGAGATATAGGTGCGGTACCCATACTGAGTATATAATATCTCTTGATGCTGATGACTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGTTAAGCTCGGATTTTCTTGGCACGAACTTCATGATTTATGACAGCAAGCCACCCCATAGTGGTGCAAAACCATCAAGTGGCAGGACTAGCCGCCGTTTTACCAGCAAGCAGATAAGCCCTGAAGTTCCTGCAGGCAACTTCGAGGTGGGGCAGGTCTTCTACAAGTTCAACCTTTTGAAATCGAGAGGGCCAAGGAGGATGGTCTGCTCACTGAAGTGTCCCATCTCATCATCATCATCATCATCGTCGGGAGAAAGTTCAGATAGCATATCTCCAGATGGCCATAAAATGTACAATAGAGAACATCACTACTCAATCTTGAAGAACAAAGCTCCAAGGTGGCATGAGAATTTACAGTGCTGGTGCTTGAATTTTCATGGTCGCGTAACCATCGCATCGGTGAAGAACTTTCAGCTCGTTGCTACCGTGGACCAAAGCCAACCAGGAGGGAAAGGAGATGAGGAAATGGTACTTCTCCAGTTTGGGAAAATAGGGGATGATACTTTCACCATGGATTATAGGCAGCCTTTATCTGCCTTCCAAGCATTTGCCATTTGCTTGAGTAGCTTTGGCACTAAACTAGCATGTGAGTAA 1122 0.4804 MSLRNVFRSRKFSRSFKVTTPSDPSSAGERSSGEESIHCNAWSNMLPELLGEIIRRVEVTEEQWPHRQNVVACACVCKRWRDITRQIVRSHSHKGTITFPSCLKQPGPRDLPHQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAGRRYRCGTHTEYIISLDADDLSQGSNAYVGKLSSDFLGTNFMIYDSKPPHSGAKPSSGRTSRRFTSKQISPEVPAGNFEVGQVFYKFNLLKSRGPRRMVCSLKCPISSSSSSSSGESSDSISPDGHKMYNREHHYSILKNKAPRWHENLQCWCLNFHGRVTIASVKNFQLVATVDQSQPGGKGDEEMVLLQFGKIGDDTFTMDYRQPLSAFQAFAICLSSFGTKLACE* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0879 373 Pfam Tub family 103 368 IPR000007 -
Lan5g0879 373 PANTHER TUBBY-RELATED 29 373 - -
Lan5g0879 373 ProSitePatterns Tub family signature 1. 301 314 IPR018066 -
Lan5g0879 373 MobiDBLite consensus disorder prediction 250 269 - -
Lan5g0879 373 PRINTS Tubby superfamily signature 157 173 IPR000007 -
Lan5g0879 373 PRINTS Tubby superfamily signature 173 197 IPR000007 -
Lan5g0879 373 PRINTS Tubby superfamily signature 222 249 IPR000007 -
Lan5g0879 373 PRINTS Tubby superfamily signature 283 300 IPR000007 -
Lan5g0879 373 PRINTS Tubby superfamily signature 301 317 IPR000007 -
Lan5g0879 373 PRINTS Tubby superfamily signature 330 349 IPR000007 -
Lan5g0879 373 PRINTS Tubby superfamily signature 351 373 IPR000007 -
Lan5g0879 373 Gene3D Tubby Protein; Chain A 98 373 IPR025659 -
Lan5g0879 373 MobiDBLite consensus disorder prediction 16 35 - -
Lan5g0879 373 Pfam F-box domain 42 88 IPR001810 GO:0005515
Lan5g0879 373 ProSitePatterns Tub family signature 2. 358 373 IPR018066 -
Lan5g0879 373 SUPERFAMILY Tubby C-terminal domain-like 93 373 IPR025659 -
Lan5g0879 373 MobiDBLite consensus disorder prediction 250 270 - -
Lan5g0879 373 MobiDBLite consensus disorder prediction 198 213 - -
Lan5g0879 373 MobiDBLite consensus disorder prediction 192 213 - -
Lan5g0879 373 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 29 373 - -
Lan5g0879 373 SUPERFAMILY F-box domain 35 86 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0879 Lan-Chr5 21790817 21794842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0879 1 373 TUB Transcription Factor Family AT1G53320 70.466 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lan5g0879 Tub 1.4e-100 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0879 K19600 - gmx:100801919 624.394