Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0877 ATGAAGAGGAATAGTTTGAGCACCAACTATGGCAACAACTACCACAACACCAAGAACCAAATGGTAATGAAAGAGTTTTTGGACTGCAACAACTCTCATAATGGAGAAGATATTGATCACTACATGAATGGTTACCCATGGCCTCCAAGGTCATACACTTGTAGCTTCTGCATGAAGGAATTCAAGTCTGCTCAAGCACTTGGTGGCCATATGAATGTGCATAGAAGAGATAGAGCAAGGTTGAGACAATCATCACCTCCAACTCCAACTACTGATAATCATCATGGTCATGTTCAAGGGCACCCTATGATGAACCTTAACCCTAACACCAACCCTAGTTTCTCATCATCAACCTCATCTAACTTACCCTTGTTACCAGCATCATGGTCTTCTCATCATTCTTCAAGTAACAAACCATCTGCAACTTCCACATTACCCTTGTTTGTTTCTCCCACAACCCTCTCTTCTTATTCTTACTCTTCTCCATCTACTGCTTCACCTTCTGAGTTGAATAGATGGGTTGTTGTGGATGGTATCTTACTGAAGAACCCTTCGAGCACAAAGACCACAGAGCCAACAAAACCAAAGATTGGAGAAGATCATGGGTGTAAAATGTTGAAGAAGGGTGAGATTCTTAGGATGGATTTGGAGATAGGTATGCCCAGAGAATATGATTTGGATCTGGAGCTTCGTTTGGGTAATTACTCTTAG 711 0.4163 MKRNSLSTNYGNNYHNTKNQMVMKEFLDCNNSHNGEDIDHYMNGYPWPPRSYTCSFCMKEFKSAQALGGHMNVHRRDRARLRQSSPPTPTTDNHHGHVQGHPMMNLNPNTNPSFSSSTSSNLPLLPASWSSHHSSSNKPSATSTLPLFVSPTTLSSYSYSSPSTASPSELNRWVVVDGILLKNPSSTKTTEPTKPKIGEDHGCKMLKKGEILRMDLEIGMPREYDLDLELRLGNYS* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0877 236 MobiDBLite consensus disorder prediction 68 121 - -
Lan5g0877 236 PANTHER OS07G0101800 PROTEIN 2 234 - -
Lan5g0877 236 MobiDBLite consensus disorder prediction 103 121 - -
Lan5g0877 236 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Lan5g0877 236 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 2 234 - -
Lan5g0877 236 Pfam C2H2-type zinc finger 52 76 - -
Lan5g0877 236 SMART c2h2final6 52 74 IPR013087 -
Lan5g0877 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
Lan5g0877 236 Gene3D Classic Zinc Finger 48 100 - -
Lan5g0877 236 SUPERFAMILY beta-beta-alpha zinc fingers 49 78 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0877 Lan-Chr5 21763091 21763926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0877 25 233 C2H2 Transcription Factor Family AT3G23130 35.545 2.23e-26 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan5g0877 zf-C2H2_6 2.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0877 - - gmx:100793786 202.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0132 19 1165642 1166593 Lan5g0877 5 21763091 21763926 LSH