Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0859 ATGAAGATTCAGTGCAACGTGTGTGAAGCTGCAGAGGCGAAGGTTCTGTGTTGTGCTGATGAAGCAACGTTGTGTTGGGAGTGTGATGAGAAGGTTCATGCTGCTAACAAGCTTGCTATTAAGCATCAAAGAGTTTCTCTTTCTATGTCTTCCTCTCATATGCCAAAATGTGATATTTGTCAGGAAGCATTTGGCTATTTCTTCTGCTTAGAGGATCGGGCTTTACTATGCCAAAAGTGTGATTTGGCAATACACACTTCGAATGCTTATGTCTCTGAACATCAAAGGTTTCTTCTCACTGGTGTAAGAGTAGGCCTTGAAGCTACTGACCCTGGTGCTTCCTCAACTTCTTTGAAGTCAGATTCTGCGGAGAAAGTTTCTGATACGAAGACTTCTTCCATCTGTAAAAAGGTTTCCCCAATGCCTCAGTCATCAGATTATGATGAAATGGTACCTATCGAAGTTGGAAAAGTTGAGGAGTTTCCGCCAGATAAAGTGTCTTTTGGTGGTGGTTCTACTGCTGGAAACATCTCACAGTGGTCATATGATGAATTTCTTGTCCTGAATGAATTCAGTCAGAATTATAATTACATTGAAGGGTCGTCGAAGGCTGACAGTGGTAAGCTTGAGGATTCTGATTCTCCAGTTTTAAGATCCATTGAAGACGAAATGGAAGACAACGATGACGACTACTTGGGACGAGTTCCGGATTCATCGTGGACAGTTCCTCAAATATCTTCCCCTCCTACATTTTCAGGGCTACGTTGGCCAGAAGTCCCTCAATATTCATCTGATAGAGCAATGTTTGTTCCTGACAAATTATTTTCTCACATGCAACAGCCTCAGAATAGTAGTGTTTTTTCAAGAAGTATGCATCTCTAA 882 0.4172 MKIQCNVCEAAEAKVLCCADEATLCWECDEKVHAANKLAIKHQRVSLSMSSSHMPKCDICQEAFGYFFCLEDRALLCQKCDLAIHTSNAYVSEHQRFLLTGVRVGLEATDPGASSTSLKSDSAEKVSDTKTSSICKKVSPMPQSSDYDEMVPIEVGKVEEFPPDKVSFGGGSTAGNISQWSYDEFLVLNEFSQNYNYIEGSSKADSGKLEDSDSPVLRSIEDEMEDNDDDYLGRVPDSSWTVPQISSPPTFSGLRWPEVPQYSSDRAMFVPDKLFSHMQQPQNSSVFSRSMHL* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0859 293 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 283 - -
Lan5g0859 293 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Lan5g0859 293 SMART bboxneu5 52 99 IPR000315 GO:0008270
Lan5g0859 293 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lan5g0859 293 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 283 - -
Lan5g0859 293 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Lan5g0859 293 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lan5g0859 293 CDD Bbox1_BBX-like 5 47 - -
Lan5g0859 293 Gene3D Classic Zinc Finger 1 94 - -
Lan5g0859 293 CDD Bbox1_BBX-like 56 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0859 Lan-Chr5 21462669 21466935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0859 1 272 C2C2-CO-like Transcription Factor Family AT1G78600 49.351 3.86e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lan5g0859 zf-B_box 1.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0859 - - gmx:100790959 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0120 19 1075923 1078838 Lan5g0859 5 21462669 21466935 LSH
Lan5g0859 5 21462669 21466935 Lan9g0234 9 3064763 3068281 LSH