Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0799 ATGGGTAGGGGAAAGGTTGAGCTGAAGAGAATTGAGAACAAGATAAATCGTCAAGTGACATTTGCAAAGAGAAGAAATGGGTTGTTCAAGAAGGCTTATGAACTTTCTATTCTCTGCGATGCTGAAATTGCTCTCATTATCTTCTCCAACCGTGGGAAACTCTATGAGTTCTGCAGCAGCTCTAGCATGGAGAAGACACTTGAGCGGTATCATAGATGCAGTTACGAGTCCTTGGAAGTACACCACCAACCTGCAATGGAAACACAGAAGAGATATCAAGAGTATCTCAAGCTGAAATCAAAAGTTGAGGCATTACAGCGCACGCAGAGAAGTTTCCTGGGGGAAGAATTAGAGCACTTAGATATTAAGGAGCTTGAGCAACTTGAACATCAGCTGGACTCTTCATTAAAGCAAATCAGGTCTAATAAGACACAACATATGATTGATCAAGTCGCTGAACTGAAAACAAAGGAAGAAATGCTACTGGAAACTAATAATATGCTGAGGAACAAGTTGGAGGAAATTAATATATCCCTTCAACCAACATGGGAGCAAAATGCTAGGGAGCATAATGCTCCCTACAACCGCCACCCTCCCACAGCAGAGGGATACTATGAGACACCACATTGCAATAGTAGCCTGGTAATCGGTTCTGCAGCAACTAATGAAGCAAGAGGAGCTCCAGGATCCTCAGCCCATAATACCAGTGAATTCATGCATGGATGGATGACCTGA 735 0.4299 MGRGKVELKRIENKINRQVTFAKRRNGLFKKAYELSILCDAEIALIIFSNRGKLYEFCSSSSMEKTLERYHRCSYESLEVHHQPAMETQKRYQEYLKLKSKVEALQRTQRSFLGEELEHLDIKELEQLEHQLDSSLKQIRSNKTQHMIDQVAELKTKEEMLLETNNMLRNKLEEINISLQPTWEQNAREHNAPYNRHPPTAEGYYETPHCNSSLVIGSAATNEARGAPGSSAHNTSEFMHGWMT* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0799 244 MobiDBLite consensus disorder prediction 223 238 - -
Lan5g0799 244 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lan5g0799 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lan5g0799 244 Coils Coil 151 171 - -
Lan5g0799 244 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan5g0799 244 PANTHER MADS BOX PROTEIN 1 221 - -
Lan5g0799 244 Gene3D - 13 109 IPR036879 GO:0003677|GO:0046983
Lan5g0799 244 MobiDBLite consensus disorder prediction 223 244 - -
Lan5g0799 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan5g0799 244 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 221 - -
Lan5g0799 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lan5g0799 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan5g0799 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan5g0799 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan5g0799 244 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan5g0799 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lan5g0799 244 Coils Coil 122 145 - -
Lan5g0799 244 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0799 Lan-Chr5 20507040 20525487 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0799 1 219 MADS-box Gene Family AT5G15800 60.538 1.31e-89 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan5g0799 K-box 1.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0799 K09264 - gmx:100811049 387.497