Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0795 ATGGTGAAACCTGGGCGAGGTCGTCGTTCACCACCATCTGGTTCCGTTTCTGGTTCATCATCTCGTTCCCGATCTCGATCTTCTTCTCCTTCCTCTCGTTCTCGATCTTCTTCTCGCTCTCGTTCCAGATCCTTTTCTTCTTCCTCTCCATCTCGCAGTTCCCGAAGCCCTAGCCGAAGTCCTCCGCCTCAGAGAAAAAAGAGTCCTGCCGAAGCAGCTAGGCGAGGTCGATCTCCTCCCCCTCCTCCTCTCAAAAGAGCTTCTCCTCCCCCAATGAAGGCGTCTCCTTTACATGAATCACTTGTTCTTCATGTAGAAAAACTCAGCAGGAATGTCAATGAAGGCCATTTGAAAGAAATTTTTAGTAACTTTGGTGAAGTTGTAAGTGTGGAGTTGGCAATGGATCGAGCTGTTAATCTTCCTAAAGGATATGGATATGTGCATTTCAAGACAAGAGAGGATGCCGAAAAAGCATTATTGTACATGGACGGTGCCCAAATAGATGGCAACATTGTTAAGGCAAGATTTACTCTACCCCCACGACAAAAAGTTTCACCACCCCCAAAGGCTGCTGCTATTGCTCCGAAGAGAGATGCTCTGAGGAGTGATAATGCTGGTGCAGATGCTGAAAAGGATGGGCCAAAGCGACAAAGAGAACCATCTCCACGGAGAAAACCTCTCTCACCGAGGAGGAGATCTCCTGTGCCTCGAAGAGTTGGATCTCCAAGAAGACCAGATTCTCCTCGCCGTCGTGCAGATTCTCCTGTTCGTCGTCGATTAGACTCTCCTCCCTATCGCCGTGGAGATACACCACCTAGGAGGAGGCCTATATCTCCTGGAAGAGGTCGTTCTCCATCTCCACCAAGGCGCCCTAGATCTCCTGGCAGAGTCTCACCTAGAAGGATGCGTGGAAGTCCCATTCGCAGACGTTCTCCTCCTCCATTAAGGCGCCGTTCACCACCGAGAAGAGCCCGTAGTCCTCCTAGAAGATCTCCAATTGGCCGTAGACGTAGTCGCTCTCCAGTACGTAGGTCTGCTCGCTCACGTTCTAGATCATTCTCACCTCGAAGGGGTCGACCACCGGTCCGACGTGGGAGGTCATCATCCTACTCTGATTCACCTAGTCCACGCAAGGTATCTCGGAGAACAAAGAGCCGCAGTCCAAGAAGGCCTTTGAGAGGAAGAGGCAGTAGCAACAGCAGCAGCAGCAGTTCACCACTCCCACCACCTCCACCTCCACCACCTCGCAAGCCATAG 1257 0.5147 MVKPGRGRRSPPSGSVSGSSSRSRSRSSSPSSRSRSSSRSRSRSFSSSSPSRSSRSPSRSPPPQRKKSPAEAARRGRSPPPPPLKRASPPPMKASPLHESLVLHVEKLSRNVNEGHLKEIFSNFGEVVSVELAMDRAVNLPKGYGYVHFKTREDAEKALLYMDGAQIDGNIVKARFTLPPRQKVSPPPKAAAIAPKRDALRSDNAGADAEKDGPKRQREPSPRRKPLSPRRRSPVPRRVGSPRRPDSPRRRADSPVRRRLDSPPYRRGDTPPRRRPISPGRGRSPSPPRRPRSPGRVSPRRMRGSPIRRRSPPPLRRRSPPRRARSPPRRSPIGRRRSRSPVRRSARSRSRSFSPRRGRPPVRRGRSSSYSDSPSPRKVSRRTKSRSPRRPLRGRGSSNSSSSSSPLPPPPPPPPRKP* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0795 418 MobiDBLite consensus disorder prediction 242 276 - -
Lan5g0795 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 171 IPR000504 GO:0003723
Lan5g0795 418 Gene3D - 14 185 IPR012677 -
Lan5g0795 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 179 IPR000504 GO:0003723
Lan5g0795 418 SMART rrm1_1 102 175 IPR000504 GO:0003723
Lan5g0795 418 MobiDBLite consensus disorder prediction 178 418 - -
Lan5g0795 418 MobiDBLite consensus disorder prediction 201 226 - -
Lan5g0795 418 PANTHER BNAA09G56240D PROTEIN 1 399 - -
Lan5g0795 418 SUPERFAMILY RNA-binding domain, RBD 87 184 IPR035979 GO:0003676
Lan5g0795 418 MobiDBLite consensus disorder prediction 1 95 - -
Lan5g0795 418 MobiDBLite consensus disorder prediction 12 61 - -
Lan5g0795 418 CDD RRM_RNPS1 103 175 IPR034201 -
Lan5g0795 418 MobiDBLite consensus disorder prediction 75 90 - -
Lan5g0795 418 MobiDBLite consensus disorder prediction 404 418 - -
Lan5g0795 418 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 1 399 - -
Lan5g0795 418 MobiDBLite consensus disorder prediction 294 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0795 Lan-Chr5 20405421 20411095 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0795 103 176 Eukaryotic Initiation Factors Gene Family AT2G23350 33.784 1.28e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0795 K14325 - gmx:100783566 248.054