Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0786 ATGGGAAAAGGAAGAGCACCATGCTGTGATAAAACTAAAGTGAAGAGAGGACCTTGGAGCCCTGAAGAAGACCTTAAACTCATAGCTTTCATCCATAAAAATGGCCATGAAAATTGGAGAGCTGTTCCTAAACAAGCAGGGCTTCTCCGATGTGGGAAAAGTTGTCGTTTGAGATGGATCAATTATCTCAGACCTGATGTAAAGAGAGGCAATTTTACAATAGAAGAAGAGCAATCCATAATAAAGCTACATAACGACTTTGGAAACAAGTGGTCAAAGATTGCATCATGTTTACCTGGTAGGACAGACAATGAGATCAAGAATGTTTGGAACACTCACTTAAAGAAAAGATTAATTGTCAAAAGTTCAGAATCTAGTGCAGATGAATCCAAGATGGAATCATCAATAACTTCCTCATCTTCATCTGAATCATTTTCCACTAATGAGGAACCAAATCTAGCTAAGACAATTCCTAATAGTGAATTAAATGAGCAAGCATTCCAAGTTACAATGAATGAGAAAATTGAGGACCCAAAAGATTCATCAACTTATTCATTCTCTTTTGTTGAGTCAAATATCCTTAACTCAAACCATATCGTTCCCTTCACACAAGAACAACAATTGTGTTCTCCATTAACCTATCTAGGACCTTATAATATTGACAATAATAATATTAATAATACATTACAAGAGGTTGATAAACCAAACAATTTGATTGAAATACCATGGGATTCAGATGAAGATTTTTGGAAGTTGATAGATAACTTTGAATCATTGCAATCAAGTGAAGTCCAATTAGAAGGGGACCCATCTAACCAAACACCAAATCATGTACAAGAGAGTGTTCAAGATGGTGAAAACATGAAGTGGACCCATGAGTTTGATAATGAGTTTGGTGAAAGAAACGAGTCTAATAAGGACCAGTTTCTACCAAAGAATTATGCAGCTGAGCTAGGAGTGGACCCTCATACATTTGATTTTGATGTTATGGAAAAGCCAGAATCTGAACTAGACTTGAGAAATATTCAATTATGGCTCATGGCATGA 1047 0.3591 MGKGRAPCCDKTKVKRGPWSPEEDLKLIAFIHKNGHENWRAVPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTIEEEQSIIKLHNDFGNKWSKIASCLPGRTDNEIKNVWNTHLKKRLIVKSSESSADESKMESSITSSSSSESFSTNEEPNLAKTIPNSELNEQAFQVTMNEKIEDPKDSSTYSFSFVESNILNSNHIVPFTQEQQLCSPLTYLGPYNIDNNNINNTLQEVDKPNNLIEIPWDSDEDFWKLIDNFESLQSSEVQLEGDPSNQTPNHVQESVQDGENMKWTHEFDNEFGERNESNKDQFLPKNYAAELGVDPHTFDFDVMEKPESELDLRNIQLWLMA* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0786 348 Gene3D - 71 144 - -
Lan5g0786 348 Gene3D - 16 68 - -
Lan5g0786 348 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Lan5g0786 348 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Lan5g0786 348 MobiDBLite consensus disorder prediction 129 158 - -
Lan5g0786 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Lan5g0786 348 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Lan5g0786 348 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Lan5g0786 348 SMART sant 68 116 IPR001005 -
Lan5g0786 348 SMART sant 15 65 IPR001005 -
Lan5g0786 348 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 320 - -
Lan5g0786 348 PANTHER - 1 320 - -
Lan5g0786 348 CDD SANT 71 114 IPR001005 -
Lan5g0786 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Lan5g0786 348 CDD SANT 18 63 IPR001005 -
Lan5g0786 348 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Lan5g0786 348 MobiDBLite consensus disorder prediction 125 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0786 Lan-Chr5 20146655 20150170 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0786 1 309 MYB Transcription Factor Family AT1G79180 42.982 3.39e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan5g0786 Myb_DNA-binding 5.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0786 K09422 - gmx:100101836 397.512