Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0770 ATGGATAAACCAGAGGATCCTCAAGAGCAGGAGCAAGATGTGACGGATGTTGCAGCATATGGTAGCCAAATGGCGTATTCTTCTAACTACCAGATTGATGCAAACCAACATCAACAGCAGCAACTTCACGCAACAGAGTATGCTCAACAGCAGCAGCAACATCACGCGACAGGTGTTGCAGCAGATGGTAGCCAAATGGTGTATTCTTCTAACTACCATACTTGTGCAACCCCTCACTATCTTGCATACCAGCAAGCGCAACTTTTTCACCATCAACAGCAGCAACTTCACGCGGCAGGTCTTGCAGCAGATGGTAGCCAAATGGCGTATTCTTCTAACTACCATACTGGTGCATCCCCTCACCATCTTGCATACCAGGAACGAAAACTTCAGCACCATCAACCAAAACATCAGCACCATCAACAGCAGCAACTTCAAACGTTCTGGGCAAGCCAAATGCAAGAAATTGAGCAAACATATGACTTCAAGAACCCCAGTTTCCCACTAGCCCGGATCAAAAGAATAATGAGGGCTGATGAAGACGTCCGGATGATTTCAGCAACAGCTCTAATCTTATTTTCGAAAGCTTGTGAGATGTTCACCACGGACTTGACTTTGCGATCTTGGGCCCACACCCTAGAGAACAAGAGGAAAATGCTACAAAGGAATGATATAGCAGCTGCTATTGCTAGAAAGGATGCTTTTGATTTCTTGGCTGATATTTTTGAAAGAGATGAGTCGAAAGAGGAAGGCCATGGAATAACAAAGGATACTCTTGGCCATGGAATAACAAAGGATACTCTTCCAATATTGGGTTCTCCAGCTGATCCACGGTATTATCATGGACCACCACAGTATCCTGTAGGACCTATAGGGATGAACATGGGAAATCCAATTGTTGATCAAGCTACAGAGATGATCATGAGAAATCCAGTTGTTGATCAAGCTACAGGGATGATGACGGGAAATCCAGTTGTTGATCAAGCTACAAGGACGATCATGAGAAATCAAGTTGTTGATCAAGCTACAGGGATGAACATGGGAAATCCAGTTTTTGATGAGGCTACAGGGATGAACATGGAAAATCCAGTTTTCGATCAAGCTACAGGGATGAACATAGGAAATCCAGTTTTTGATGAGGCTACAGGGATGAACATGGGAAATCCAGTTTTCGATCAAGCTACAAGGATGAACATAGGAAATCCAGTTTTTGATGAGGCTACAGGGATGAACATGGTAAATCCAGTTTTCGATCAAGCTACAGGGATGAACATGGGAAATCCAATTTTCGATCAAGCTACAGGGATGATCATGGGAAATCCAATTGTTGATCAAACTACACTATATTCTACTCCGCAGCATGGACTTCCCATGCCTTTCATGCCATGGCTGGATGCACAACCTCCGCAACAGCAACTACAACATCAAGAAGAAACTGATCCTTGA 1446 0.4391 MDKPEDPQEQEQDVTDVAAYGSQMAYSSNYQIDANQHQQQQLHATEYAQQQQQHHATGVAADGSQMVYSSNYHTCATPHYLAYQQAQLFHHQQQQLHAAGLAADGSQMAYSSNYHTGASPHHLAYQERKLQHHQPKHQHHQQQQLQTFWASQMQEIEQTYDFKNPSFPLARIKRIMRADEDVRMISATALILFSKACEMFTTDLTLRSWAHTLENKRKMLQRNDIAAAIARKDAFDFLADIFERDESKEEGHGITKDTLGHGITKDTLPILGSPADPRYYHGPPQYPVGPIGMNMGNPIVDQATEMIMRNPVVDQATGMMTGNPVVDQATRTIMRNQVVDQATGMNMGNPVFDEATGMNMENPVFDQATGMNIGNPVFDEATGMNMGNPVFDQATRMNIGNPVFDEATGMNMVNPVFDQATGMNMGNPIFDQATGMIMGNPIVDQTTLYSTPQHGLPMPFMPWLDAQPPQQQLQHQEETDP* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0770 481 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 166 229 IPR003958 -
Lan5g0770 481 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 129 303 - -
Lan5g0770 481 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-1-RELATED 129 303 - -
Lan5g0770 481 Gene3D Histone, subunit A 128 244 IPR009072 GO:0046982
Lan5g0770 481 SUPERFAMILY Histone-fold 131 238 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0770 Lan-Chr5 19592751 19595996 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0770 145 280 CCAAT-HAP5 Transcription Factor Family AT1G56170 63.971 2.31e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lan5g0770 CBFD_NFYB_HMF 1.2e-13 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0770 K08066 - gmx:100796987 243.432