Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0769 ATGGAACCAAATCTCCTCTTCGATCAAAGCTTTCCACTCTTCAAACCCTCCAAAATTCCCACACCAGTCACCACCACCACCATCTCCGCCACCGCCAAAAACCCTAACTCAAACCCCGACCACCCCGACGAACCCGACGACACGGACGCCCTTCCCGCCGCCACCGAATCCGCCACATTCGCCGACCTCGGACTCTCCGAGTGGGCAGTGAAAACCTGCAAGGAGCTCGGGATGCGAAATCCCCGTTCCGTACAGTCTCGATGCATCCCGAAGGTTCTAGAAGGCCGCCATGTCCTCGGCATCGATGAAACCGGTAGCGGCAAGACTGCTGCATTCGCCCTGCCAATCCTCCACCGCTTATCAGAGCACCCGTTCGGCGTCTTTGCTCTCGTGGTGACGCCGACGCGGGAGCTTGCATTCCAGCTGGCAGAGCAGTTCAGGGCCCTTGGCTCCTGCCTGCACCTCCGGATATCTGTTGTAGTTGGTGGAATGGACATGCTCAAGCAGACTAAGGACTTGGTGGCCCGGCCCCACGTCGTTATCGCCACACCGGGGAGGATCAAGGTTTTGCTTGAGCAGAATCCTGATATTCCTCCAATTTTCTCCAGGACTAAGTTCCTTGTCTTGGATGAAGCAGATCGAGTCCTGGATGTTAGTTTTCAGGAGGAATTGAAATTTATCTTTCGGTGCTTACCAGAAAATCGGCAAAATCTGTTCTTTTCTGCAACAACGACAAGTAATCTGCAAAAGTTGTGTGAGCGTTACCAAGATAAGCTTTACATCTATGAAGCTTATGAAGGCTTGAAAACAGTTGAAACACTTAAGCAACAGGTTATATTTATCCCCAAAAAGGTGAAGGAGGTGTATTTGATGCATATTTTGTCTAAAATGGAGGAGATGGGCATTCGATCTGCCATTATATTTATCTCCACATGCAGAGATTGTCATCGTTTAAGTTTAATGTTGGATGTGCTTGATCAAGAAGCTGCAGCTTTATATTCGTTCAGATCGCAGTCTGAGAGGCTTCAGGCACTACAACAATTTAAATCAGGAAAAGTTTCTATACTGCTAGCAACTGATGTTGCCAGCCGTGGTTTGGATATCCCTACAGTTGACCTCGTTATCAATTATGATGTTCCAAGGTTTCCACGAGATTATATTCATCGTGTTGGTCGTACTGCAAGAGCAGGTAGAGGAGGATTGGCCTTGAGCCTTGTCACCCAGAACGATGTTGATCTCATCCGTGAGATAGAAGCTCTTATTGAAAGGAAAATTGAACTGCTTGAATACAAAGAAAATGAAGTGCTATCTCTCATGAAAAAGGTTTTCAGTGCTAAGAATGTAGCGCAAATGAAGATGTTGGATGATGGCTTTGAGGAGAAAGCAAAAGAGCGGAAAAAACAAAAATTGAGAATGCTATCAGAGAAAGGATTGTTGAAGAAAGGAAGTAAGAAGAGAAAGAGAAATAAAGAATTTAAAGATGAAGGAAGAAAGCAGAAAAAAGAGGAGCCGGAAGCATTATCAGATAAAGCATCACTAAAGAAAAGGAGTAAGAAGAGGGAGTAA 1566 0.461 MEPNLLFDQSFPLFKPSKIPTPVTTTTISATAKNPNSNPDHPDEPDDTDALPAATESATFADLGLSEWAVKTCKELGMRNPRSVQSRCIPKVLEGRHVLGIDETGSGKTAAFALPILHRLSEHPFGVFALVVTPTRELAFQLAEQFRALGSCLHLRISVVVGGMDMLKQTKDLVARPHVVIATPGRIKVLLEQNPDIPPIFSRTKFLVLDEADRVLDVSFQEELKFIFRCLPENRQNLFFSATTTSNLQKLCERYQDKLYIYEAYEGLKTVETLKQQVIFIPKKVKEVYLMHILSKMEEMGIRSAIIFISTCRDCHRLSLMLDVLDQEAAALYSFRSQSERLQALQQFKSGKVSILLATDVASRGLDIPTVDLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQNDVDLIREIEALIERKIELLEYKENEVLSLMKKVFSAKNVAQMKMLDDGFEEKAKERKKQKLRMLSEKGLLKKGSKKRKRNKEFKDEGRKQKKEEPEALSDKASLKKRSKKRE* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0769 521 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 58 86 IPR014014 GO:0003724
Lan5g0769 521 Pfam Helicase conserved C-terminal domain 292 397 IPR001650 -
Lan5g0769 521 Coils Coil 414 434 - -
Lan5g0769 521 CDD SF2_C_DEAD 274 406 - -
Lan5g0769 521 Gene3D - 269 442 IPR027417 -
Lan5g0769 521 PANTHER RNA HELICASE 56 490 - -
Lan5g0769 521 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 208 216 IPR000629 -
Lan5g0769 521 MobiDBLite consensus disorder prediction 465 479 - -
Lan5g0769 521 MobiDBLite consensus disorder prediction 1 51 - -
Lan5g0769 521 Pfam DEAD/DEAH box helicase 83 251 IPR011545 GO:0003676|GO:0005524
Lan5g0769 521 MobiDBLite consensus disorder prediction 19 38 - -
Lan5g0769 521 MobiDBLite consensus disorder prediction 488 514 - -
Lan5g0769 521 MobiDBLite consensus disorder prediction 465 521 - -
Lan5g0769 521 CDD DEADc_DDX49 60 263 - -
Lan5g0769 521 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 289 436 IPR001650 -
Lan5g0769 521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 417 IPR027417 -
Lan5g0769 521 PANTHER ATP-DEPENDENT RNA HELICASE DDX49-RELATED 56 490 - -
Lan5g0769 521 Gene3D - 48 262 IPR027417 -
Lan5g0769 521 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 89 262 IPR014001 -
Lan5g0769 521 SMART helicmild6 316 397 IPR001650 -
Lan5g0769 521 SMART ultradead3 77 277 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0769 Lan-Chr5 19585797 19591441 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0769 48 426 Eukaryotic Initiation Factors Gene Family AT3G19760 29.474 1.52e-53 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0769 K14778 - gmx:100798597 768.844