Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0749 ATGGTCCATCGTTGCTGCAGCAAACAGAAGATTAAAAGAGGACTATGGTCTCCTGAAGAAGATGATAAGCTTCTAAAGTATGTCACTTCTCATGGCCATAAAAGTTGGAGTTCTGTCCCAAAGTTTGCAGGGTTGCAAAGATGTGGAAAGAGCTGCAGATTGAGATGGATAAATTATTTGAGGCCAGATTTGAAGAGAGGTTCTTTCACAGATGAAGAAGAGCAGATCATAATTGATGTTCATAGAATTCTGGGAAACAGATGGGCCCAAATAGCCAAACACCTCCATGGAAGAACAGATAATGAGGTCAAGAATTTCTGGAACTCTTGCATTAAAAAGAAGCTAATTTCTCAAGGCTTAGACCCACAAACTCACAATCTACTCTCTTCTCATAGAAGAAGCTCAACTTGCACTACTATTTCCACTACTAATCAATATTCAAATTCCATTTTTTTTATGAGTTCACAAATACCAAACACTCCCATGCAAACTAGACAAACTTTATCTTCATTACCTAAAGCTCAACGAAGCACTTTTCAAACTCCATCTACCATTATTTCCTCTCAATCTCAAACACCCAACATTGTTCCATATGAACTCTCAGATTTGCCTTATGAACCATTAACTGAGAACCCCACCAATATTTGTTCTTCTTCTTACATGGACCCATCTGAGATAAGATTGTCTAACAATGGGAATAATAACATCTGGGTTTCAAGTATTGATGCTGAAGATTTAAGAGTTCAATCATTAGAAGAAGGACTACAATCACAGGTGCAGGTGGAGAAGGATAAGACTTGCGAGAAGGGAATTGAAGAAATAAAAGAAGCTGAGAAGGATAATCTTGAAACAAATGCTTCTTTGGAGAACTCTAACTTTGATTTTGGATTGTTGGAGAGTTTACTTAGTTCTGACTTTATGTCCCATGATCTCAACTATATGGATGAACTTGCATGGAATTTTTAG 966 0.3727 MVHRCCSKQKIKRGLWSPEEDDKLLKYVTSHGHKSWSSVPKFAGLQRCGKSCRLRWINYLRPDLKRGSFTDEEEQIIIDVHRILGNRWAQIAKHLHGRTDNEVKNFWNSCIKKKLISQGLDPQTHNLLSSHRRSSTCTTISTTNQYSNSIFFMSSQIPNTPMQTRQTLSSLPKAQRSTFQTPSTIISSQSQTPNIVPYELSDLPYEPLTENPTNICSSSYMDPSEIRLSNNGNNNIWVSSIDAEDLRVQSLEEGLQSQVQVEKDKTCEKGIEEIKEAEKDNLETNASLENSNFDFGLLESLLSSDFMSHDLNYMDELAWNF* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0749 321 CDD SANT 68 108 IPR001005 -
Lan5g0749 321 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Lan5g0749 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Lan5g0749 321 SMART sant 65 113 IPR001005 -
Lan5g0749 321 SMART sant 12 62 IPR001005 -
Lan5g0749 321 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Lan5g0749 321 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Lan5g0749 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Lan5g0749 321 PANTHER BNAC05G40480D PROTEIN 1 308 - -
Lan5g0749 321 CDD SANT 16 60 IPR001005 -
Lan5g0749 321 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Lan5g0749 321 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Lan5g0749 321 PANTHER MYB DOMAIN PROTEIN 55 1 308 - -
Lan5g0749 321 Gene3D - 13 65 - -
Lan5g0749 321 Gene3D - 68 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0749 Lan-Chr5 19161122 19162732 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0749 1 133 MYB Transcription Factor Family AT3G12720 84.962 2.53e-86 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan5g0749 Myb_DNA-binding 5.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0749 K09422 - gmx:100791209 427.172