Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0721 ATGGATACGGCGGCGGAGGAAGAATTAAAAACGTACTGGTGCCACGAATGCGACATGAGCGTGTCTCTCACGCTCTCCTCATCTTCATCACCTCTTCTTTGTCCTCATTGCAATACCAACTTCCTCGAACTCATGGATTCTCCTTTCCACCAAAACGACGCCGTTTCACCACTCTCCATCTTCAGCTCCCCCTTCCTCCACAGCCTCATCTTCACCACTAGCCCCAACGACGCCGTTTTGGAGAACGACGATTTCGGTGAAGACCTACTCGCTTTAGTAACGTCAAAGCCACGCGCTGCAGACACTGTAACTGTAATCCATGTAACTGATTCCATGCTCTTGAATCTTGACCCATACGGCGTCGTTTTATGCGCTGTATGCAAAGATGAGATCGCGGTCAACGATAAAGCTAAGATTCTTCCTTGTAACCACTTGTATCATTGTGATTGCATAACGCCATGGCTTTTGAATCATGATTCGTGTCCGATTTGTCGGTTTCGGCTTGTGGAGGAGGAAGATCAAGGAGAAGACGGTGACGGTGGTGGTGTGAGGATGCATTTGAGAGAAGCGGTGATGAGGCTTTCGGAGTTGATGGAAGAAGATGAGGAAGATTTCTATGGATTGAGAACTACTCTGAATCACATTGCTTATAGGCATGGGATTCTTCATGAGGATTCTGATGGTTCTGGTGTGAGTGAGTCCATGATTGCATATGGTGACAGTGGAGATGAACAATTACCATGA 744 0.4718 MDTAAEEELKTYWCHECDMSVSLTLSSSSSPLLCPHCNTNFLELMDSPFHQNDAVSPLSIFSSPFLHSLIFTTSPNDAVLENDDFGEDLLALVTSKPRAADTVTVIHVTDSMLLNLDPYGVVLCAVCKDEIAVNDKAKILPCNHLYHCDCITPWLLNHDSCPICRFRLVEEEDQGEDGDGGGVRMHLREAVMRLSELMEEDEEDFYGLRTTLNHIAYRHGILHEDSDGSGVSESMIAYGDSGDEQLP* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0721 247 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 49 - -
Lan5g0721 247 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 62 178 - -
Lan5g0721 247 Coils Coil 184 204 - -
Lan5g0721 247 Pfam Ring finger domain 124 165 IPR001841 -
Lan5g0721 247 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 62 178 - -
Lan5g0721 247 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 1 49 - -
Lan5g0721 247 SMART ring_2 124 164 IPR001841 -
Lan5g0721 247 Pfam zinc-ribbon 11 45 IPR039525 GO:0061630
Lan5g0721 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 182 IPR013083 -
Lan5g0721 247 ProSiteProfiles Zinc finger RING-type profile. 124 165 IPR001841 -
Lan5g0721 247 SUPERFAMILY RING/U-box 123 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0721 Lan-Chr5 18375840 18378955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0721 5 208 C3H Transcription Factor Family AT3G60080 32.099 2.14e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0721 K11982 - gmx:100775530 197.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0721 5 18375840 18378955 Lan9g0174 9 2014864 2017290 LSH