Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0714 ATGTGCGGTGGTCCAGAGAAATCAAAATCTGCATCTTCATCTGCGGCAGAAGGTTCAACTAACGTTGAAGAGATGAAAAATCTGACTGTTCATACTGAAGAATCCTTTTCCAGCTTACTTGAGCTTGCTTCTAACAATGATTTTGAAGATTTTAAGCTAGTCTTAGATAAGGATGCTTCTCTAATTAATGAAGTTGGCCTATGGTATGTTTGTCGAATTGGCTCTAAACAAGTTGTTCTTGAGCGTAGAACTCCTTTAATGGTTGCTGCTACCTATGGGTGCATGGATGTTGTGAAGCTTATACTCTCGTACCCAGAAGCTGATGTAAACTTCTCTTGCGGGGCAGATAAAAGCACTGCTCTTCATTGTGCTGCTTCAGGTGGGTCTGTTGATGCAGTTAGTGTTGTGAAGCTTCTTATATCAGCTGGTGCTGATATCTGTTGTGTGGATGCTAATGGAAACCGTCCGATAGATGTTATTGTCGTTCCTTTTAAGCTTCAAGGCATGAAAGCAATTCTTGTTGAACTTCTTTCCGATAGTGCATCTGATGGGTCTGTTGATGACTGTTTTATCCCACCTTCTGTTGGTTCATCAAGTCCTGGTTCAACTGCTCATTTATCATCACTTGAATATGGGTTGCCATCCTCTCCTTCAGGCTCACCACCTTCTCCTGTGGCCTCAAAGTTTATTGATACACCTGAGAAGAAGGAGTATCCAACTGATCCATCACTTCCTGATATAAAAGACAGCATATATGCGACAGATGAGTTTCGCATCTTCTCATTCAAGGTCCGTCCTTGTTCCCGTGCATACTCTCATGATTGGACTGAGTGTCCTTTTGTTCATCCTGGAGAGAATGCTCGCAGGAGAGACCCCAGAAAGTTCCATTACAGCTGTGTTCCATGCCCTGATTTTAGAAAAGGGGCTTGTAGACGTGGGGATATGTGTGAATATGCTCATGGTGTATTTGAAAGCTGGCTGCACCCAGCCCAGTATCGGACAAGGCTTTGCAAAGATGGTACTAGTTGCAACAGAAGGGTATGTTTTTTCGCTCATGCGGTAGAAGAGCTTCGTCCACTGTACGGATCCACAGGTTCAGCTGGCCATTCTCCTCGCTCACCTGCTTCTGCTCCTAATGTCATGGACATGGCTGCTGCAATGAGTCTTTTTCCTGGTTCACCCTCATCTATGTCTTCCATGTCTCCGTCCCCCTTTGCTCAGCCTATGTTTCCATCTGCAAATGGCATCTCTAATTCGTCTGCTGGTGGTTGGCCCCAGCCAAATGTGCCAGCTCTTCATTTACCAGGAAGCAATCTTCAATCTAGTCGCTTGAGATCTTCTTTTAATGCTCGTGACATGCCACAAGAAAACTTGAACATGTTGCCAGATTTTAATGGGCAACAGCACCTTTTCAATGACTTGAGCTGTTTCTCTCAGCACCATCCTGGTGTTGGTTCAGTGAGTCGACCCAGTTGGGCTAAGACACTAACCCCATCTAATCTTGATGAGCTTTTCTGTTCTGATATTTCTTCATCTCCTCGATATTCTGACCCAGCAGCGGCTTCTGTATTTTCTCCTACACACAAATCAGCTGTGTTCAATCACTTTCAACAGCTTCAAAGTACATTAGCACCCATAAATACAAACCCCTTGTCACCTAAAAATGTTGAGCATCACCTATCACAAGCATCATTTGGTGTCTCTTCTCCTGGAAGGATGTCACCAAGAAGTATGGAATCAATCTCTCCCATGAGCTCTCGTTATTCAGCATTTGCTCATCGTGAGAAACCTCAGCAACAGCTATGGAGCCCTAGCTCAAGGGACCTTGGTGTTAACTCTTCTGCTTCAGTTGTTGGGTCCCCTGTAAACTCCTGGTCCAAATGGGGATCTCCTAATGGAAAAGCAGATTGGTCAGTAAATGGAAATGAACTAGGTCCCACGTTTGAGCACGGAAATAATGGGGAGGGCCCTGATCTATCATGGGTTCAATCTCTTGTCAAGGAATCTCCACCTGAAATGATAAAGGAGAACTTTGCAGGTTCTGGCCCTATTGCATCTGCTGCTGATGGACTGAAAACCAATCCTCAAATTGAATCCATTGATCACTCTGTTGTAGGTGCCTGGCTTGAGCAAGTGCAGCTGGATCAGTTTGTCGTCTAA 2160 0.4468 MCGGPEKSKSASSSAAEGSTNVEEMKNLTVHTEESFSSLLELASNNDFEDFKLVLDKDASLINEVGLWYVCRIGSKQVVLERRTPLMVAATYGCMDVVKLILSYPEADVNFSCGADKSTALHCAASGGSVDAVSVVKLLISAGADICCVDANGNRPIDVIVVPFKLQGMKAILVELLSDSASDGSVDDCFIPPSVGSSSPGSTAHLSSLEYGLPSSPSGSPPSPVASKFIDTPEKKEYPTDPSLPDIKDSIYATDEFRIFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFESWLHPAQYRTRLCKDGTSCNRRVCFFAHAVEELRPLYGSTGSAGHSPRSPASAPNVMDMAAAMSLFPGSPSSMSSMSPSPFAQPMFPSANGISNSSAGGWPQPNVPALHLPGSNLQSSRLRSSFNARDMPQENLNMLPDFNGQQHLFNDLSCFSQHHPGVGSVSRPSWAKTLTPSNLDELFCSDISSSPRYSDPAAASVFSPTHKSAVFNHFQQLQSTLAPINTNPLSPKNVEHHLSQASFGVSSPGRMSPRSMESISPMSSRYSAFAHREKPQQQLWSPSSRDLGVNSSASVVGSPVNSWSKWGSPNGKADWSVNGNELGPTFEHGNNGEGPDLSWVQSLVKESPPEMIKENFAGSGPIASAADGLKTNPQIESIDHSVVGAWLEQVQLDQFVV* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0714 719 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 19 716 - -
Lan5g0714 719 SMART ANK_2a 116 148 IPR002110 GO:0005515
Lan5g0714 719 SMART ANK_2a 81 111 IPR002110 GO:0005515
Lan5g0714 719 MobiDBLite consensus disorder prediction 593 625 - -
Lan5g0714 719 MobiDBLite consensus disorder prediction 7 23 - -
Lan5g0714 719 MobiDBLite consensus disorder prediction 1 23 - -
Lan5g0714 719 Gene3D - 5 163 IPR036770 -
Lan5g0714 719 PANTHER UNKEMPT FAMILY MEMBER 19 716 IPR045234 -
Lan5g0714 719 Pfam Ankyrin repeats (3 copies) 46 148 IPR002110 GO:0005515
Lan5g0714 719 ProSiteProfiles Zinc finger C3H1-type profile. 301 323 IPR000571 GO:0046872
Lan5g0714 719 SUPERFAMILY Ankyrin repeat 30 160 IPR036770 -
Lan5g0714 719 ProSiteProfiles Ankyrin repeat region circular profile. 116 146 - -
Lan5g0714 719 SMART c3hfinal6 296 322 IPR000571 GO:0046872
Lan5g0714 719 SMART c3hfinal6 331 354 IPR000571 GO:0046872
Lan5g0714 719 MobiDBLite consensus disorder prediction 208 229 - -
Lan5g0714 719 Gene3D - 296 359 - -
Lan5g0714 719 ProSiteProfiles Ankyrin repeat profile. 116 151 IPR002110 GO:0005515
Lan5g0714 719 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 301 321 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0714 Lan-Chr5 18080393 18084292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0714 1 716 C2H2 Transcription Factor Family AT5G12850 50.203 0.0 627
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan5g0714 Ank_2 1.9e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0714 - - gmx:100792574 1039.64