Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0699 ATGTCACAAGGCCAACACAAGAATAACAACCTTAGCTGTCAGGTAATTTCAAGTTGCAAAGAAAAGATGAGTGTTATGTATAGTCATGTTTTCAAGTACTCAGAAGAGGAGCAAAAGAAAAACCAAGAAATGGATTATAGTATTGGAAATCCACAACAAAACTATCATAGCCAGTACAATTCAGAATTTGTGAGGTACCTTGCAGACAACAACACTCAGAGCTATGTGAAAGAGGAAGAAGCTTTTAGAAGTGAGGAAAATGAGATTCAGCAGTGTTATCTTCCAACCACAAGTTCAGAAATGGATACCATGTTGTCTAATTTGATATCTTCCAACAATGGATGGAACAATTCTCAACCTTTGCAAGAGTTTGGAGACAAACCTGTGAAACAGGAAGCAGGAGGAGAGTTTATTTCAGAACAGAACGGTTACTCTTTTGGAAGGTCTCAGACTCAGTTAGTTTACCAATCTCAGCAATCTGAAATGGGTGTTAAGAATTGCTCTAATCTCATTAGGCAAAAGAGCTCCCCTGCTGAATTCTCCGCCGATGAAAATGGTCTTGAAGCATTGAGAGAGGTAGGAAGCTTTCGGGTCAGTAATGTCTCAAATGGACAGACTACTGCATCAACTAGTGGGTTGCATAGCCCTCTTGCCTTCTCATCTAAGCCATCCTCATGTTTGAAACGAATGCTGCAGATCGATGAGAATGAAAATGAAAGACTAGAAACAAATTGTGAGCAAAGTAGAAACCTGGTACATGACAATGGCAGCTCTAATTTTTATATGCCTAGCTTCTCCAATGAGTTTTGGGAAGATTCTGAATTCAATGCTCAGAAAACAGCAATTGAAGAAGATGAGATCATGTTTTCTGCTTCAAATGCTTTGGAATCTCAGGATGCAGAACTTTGCTATCAGAATCTTGGTTTGACTAACCATTTGAGCCTGCCTAGTTCTTTCTCTAAGATGCCATCCACAGAGAAGTTTCTCCAAATTCAAGGATCCATACCTTGCAAAATTCGAGCCAAAAGAGGTTATGCTACTCACCCAAGAAGCATTGCAGAGAGGGTAAGAAGAACACGGATTAGCGCAAGAATCAAGAAATTGCAAGGTCTTTTCCCACTATCAGACAAGCAAACAAGTACCTCAGATATGTTGGATATGGCATTTGATTACATTAAAGACCTTCAGGATCAAGTTCAGATACTGGCAGATAGAAAAGCAAAGTGCAAATGTACAAGTAATCAGAAGCAATACTAA 1257 0.393 MSQGQHKNNNLSCQVISSCKEKMSVMYSHVFKYSEEEQKKNQEMDYSIGNPQQNYHSQYNSEFVRYLADNNTQSYVKEEEAFRSEENEIQQCYLPTTSSEMDTMLSNLISSNNGWNNSQPLQEFGDKPVKQEAGGEFISEQNGYSFGRSQTQLVYQSQQSEMGVKNCSNLIRQKSSPAEFSADENGLEALREVGSFRVSNVSNGQTTASTSGLHSPLAFSSKPSSCLKRMLQIDENENERLETNCEQSRNLVHDNGSSNFYMPSFSNEFWEDSEFNAQKTAIEEDEIMFSASNALESQDAELCYQNLGLTNHLSLPSSFSKMPSTEKFLQIQGSIPCKIRAKRGYATHPRSIAERVRRTRISARIKKLQGLFPLSDKQTSTSDMLDMAFDYIKDLQDQVQILADRKAKCKCTSNQKQY* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0699 418 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Lan5g0699 418 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 345 395 IPR011598 GO:0046983
Lan5g0699 418 SMART finulus 351 401 IPR011598 GO:0046983
Lan5g0699 418 Pfam Helix-loop-helix DNA-binding domain 350 396 IPR011598 GO:0046983
Lan5g0699 418 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 61 415 - -
Lan5g0699 418 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 61 415 - -
Lan5g0699 418 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 348 411 IPR036638 GO:0046983
Lan5g0699 418 Gene3D - 346 417 IPR036638 GO:0046983
Lan5g0699 418 Coils Coil 224 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0699 Lan-Chr5 17529849 17533040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0699 168 401 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 43.333 3.26e-38 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan5g0699 HLH 2.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0699 - - gmx:100812802 488.804