Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0694 ATGTCTACTCTCTACTCTTCTCTTCTCTCACAACCCAATCTCATTTCCCTCACTTCAACACCAACAACTACTTCCTCCAACCACACCATTCTCAGTTTCAAACCCATCACACCAACAACCCTTGTTTTCAACTTGGTTCCTTCTCTCGCTTTTTCTGCAACTACTCCAAAACGACACCGTTTTCTGACTCCCTTTGCCGTTGCTGAAGAAACTGCTACGGTTGCCGACGTGTCTTCTAGGAAACTCTATGTTGGGAATATTCCTCGTACTGTAAATGATGATGAGCTTGCGAATATTGTTCAGGAACATGGTGCTGTTGAGAAAACTGAGGTTATGTATGATAAGTACTCTGGAAGGAGTCGTCGCTTTGCATTTGTTACAATGAAAACTGCTGAGGATGCTAATGCAGTAATCGAAAAACTTAATGGCACTAAAATCGGAGGGCGTGAGGTCAAAGTTAATATAACTGAAAAACCTTTGCAAACAGTAGATTCACCTTCAGTCCAGTCCGAGGAATCTGAATTTATTGACAGTCCTTCCAAGGTATACGTGGGAAATCTGGCCAAGACAGTAACGTCAGATATTCTTAAGAACTTTTTCTCTGAGAAGGGAAAAGTTCTTAGTGCCAAGGTTTCACGGGTTCCTGGGACATCAAAGTCTACTGGGTTTGGTTTTGTTACCTTTTCTTCCGATGAGGACGTAGAAACTGCAATCTCATCTTTCAACAATTCTTTGTTAGAAGGGCAAAATATTCGCGTGAATAAGGCGTAA 771 0.4176 MSTLYSSLLSQPNLISLTSTPTTTSSNHTILSFKPITPTTLVFNLVPSLAFSATTPKRHRFLTPFAVAEETATVADVSSRKLYVGNIPRTVNDDELANIVQEHGAVEKTEVMYDKYSGRSRRFAFVTMKTAEDANAVIEKLNGTKIGGREVKVNITEKPLQTVDSPSVQSEESEFIDSPSKVYVGNLAKTVTSDILKNFFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVETAISSFNNSLLEGQNIRVNKA* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0694 256 SMART rrm1_1 81 154 IPR000504 GO:0003723
Lan5g0694 256 SMART rrm1_1 181 254 IPR000504 GO:0003723
Lan5g0694 256 Gene3D - 53 161 IPR012677 -
Lan5g0694 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 158 IPR000504 GO:0003723
Lan5g0694 256 SUPERFAMILY RNA-binding domain, RBD 175 256 IPR035979 GO:0003676
Lan5g0694 256 SUPERFAMILY RNA-binding domain, RBD 71 159 IPR035979 GO:0003676
Lan5g0694 256 PANTHER OS02G0815200 PROTEIN 1 256 - -
Lan5g0694 256 Gene3D - 162 256 IPR012677 -
Lan5g0694 256 PANTHER 30S RIBOSOMAL PROTEIN 2, CHLOROPLASTIC 1 256 - -
Lan5g0694 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 256 IPR000504 GO:0003723
Lan5g0694 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 252 IPR000504 GO:0003723
Lan5g0694 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 152 IPR000504 GO:0003723
Lan5g0694 256 CDD RRM_HP0827_like 81 158 - -
Lan5g0694 256 SMART rrm2_1 181 254 IPR003954 GO:0003676
Lan5g0694 256 SMART rrm2_1 81 154 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0694 Lan-Chr5 17347339 17350379 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0694 82 256 Eukaryotic Initiation Factors Gene Family AT2G23350 32.022 2.35e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0694 K13126 - gmx:100811197 317.005