LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan5g0688	ATGTGGAAATTTAAGCCTTTCACACACAAAGAGCCAGCTGGGCTTGAAGGCCGCTCTGTAGATGTTGGCAGTGTTAAAATACATGTCCAGAAGGCCATTGCTGAAGGAGGGTTCTCTTGTGTCTACTTAGCTCGTGATGCTGTACATATGTCAAAACAATATGCTTTAAAGCACATAATATGCAATGATGAAGAATCACTTGCGTTGGTAAAGAAGGAGATCTCTGTGATGAAGTTACTGGTAGGACATCCCAATGTTGTCACACTTCATGCACATACAATCTTTGATATGGGTAGGACAAAAGAGGCATTCATTGTGATGGAATTTTGTGAGAAATCTTTGGTTACGGTGCTGGAGAGCCGAGGGGCTGCTTATTTCGATGAGAAACAGATTCTTTTAATCTTCAGGGATGTATGTAATGCAGTTATCTCTATGCACTGTCAGTCCCCCCCTATTGCTCACCGAGACTTGAAAGCAGAGAATCTTTTACTTGGTTCAGATGGTTTATGGAAGTTGTGTGATTTTGGAAGCACTACCACCAATCACAAACGCTTTGAGAAACCAGAAGAAATGGGGATTGAGGAAGACAATATTAGGAAGTACACAACCCCTGCCTACAGAGCTCCCGAGATGTGGGATCTGTTCCTGAGAGAAGTCATTAATGAGAAAGTGGACGTATGGGCACTCGGGTGTCTCCTTTTTCGCATATGCTACTTCAAAAGTGCATTTGATGGAGAATCAAAGCTCCAAGTCTTAAATGGAAACTACCGCATTCCTGATTCACCTAAATACAGTTCATCTATGACGGACTTAATCAGAGACATGCTTCAAGCTAGACCAGATGACAGACCTGATATCACGCAGGTCTGGTTTCGTGTTAATGAGCAGCTACCTATTAATTTGCAGAAGTCATTACCTGACAGGCTACCTGAATTGCTTGCTTCAAACAGTCATGAAGGTGCTTCCTTGGCCACAAATAAATCACCTCCAATGCCTCGTAGGAGTCCACCCCCTCCACCTTCATCTGGAGAACCCAAAAATACATCACAGCCATCCCCTGCTTCTAGGGCTGTGGGAAGCGGGGGTGCACTTGGTGCTTTCTGGTCCTCTCAGCATGCAAAGGATACAGTTGTCCCCGAGGAAAAGAGCAAACCAATATTCGATGAAGAGCAATCTAGTCACCATATCTCATTGAAACATGATACAATTCGTCCAGACAATGATCCATTATCCAAGAATGTTACTAGTGCTAACAGAGTGGTTAACACTCAAACTCATACTGCGAAAAGCAGTATACATGGAAAACCACATAATCCTGATACTGGATCTTCCAAGGACATTGAAATAAACTTTTTTCAGCCTAAAGATCACACAAGTGAGAGGCGGAGGTCAAGTGTCGGGAATACAATGAACTTTCAGGATCAGACTTTTATCTCCTTTGTTGCTGACTTTGATACCACTAAGTTCAACTCTTCTGGACTTGGTAATAAATCTGAGAAGGAAGAAGCATTAGAGGCTGAGCTAGAGAAACTCAAAGAGCAACTGAAGGAAGCTAAGTTGGAAAAGGCTGAAATAACTTCAAAATATGAGAAGCTTTCTTCCATCTGTCGATCGCAGAGGCAAGAATTGCAGGATCTCAAGCAAGCACTTGCTGTGAAAACCCCTTCACCGAGTAAAGAGGGTTTGAGAACCTCTCCAGGAATTCGATCACCTGCATCCGTGAGAGAGAAGATTGGTGGGACGGTTAGGGAACATCAGCAGGATAAAACTGAATGGAAAACTCCTAGTTCAGAACCAAAGTCGTGGAAAGCTTTTCCTGATGAACCCCAGAAACTAAATTCCCTTTCAGCAGATAATACAACCAAATCCGTCAGGACAAGAAATGGTCAGCAGCATAACAAGCATGATGCTCAACTAGCTACCGATTTCGATACATGGGGTTTTGGAACAGATAATTTCAGTGCTGTTGGTACTGGAAGCCCCCAGATGTTAAGACCTAGTGAAGGGAGTAATATAGAGGGTTTCAGTGAGGCAAAAGCCTTTGAGAACAAGTCAACTTCCCAACCCGCTGGATGGGCTGGTTTTTAA	2088	0.433	MWKFKPFTHKEPAGLEGRSVDVGSVKIHVQKAIAEGGFSCVYLARDAVHMSKQYALKHIICNDEESLALVKKEISVMKLLVGHPNVVTLHAHTIFDMGRTKEAFIVMEFCEKSLVTVLESRGAAYFDEKQILLIFRDVCNAVISMHCQSPPIAHRDLKAENLLLGSDGLWKLCDFGSTTTNHKRFEKPEEMGIEEDNIRKYTTPAYRAPEMWDLFLREVINEKVDVWALGCLLFRICYFKSAFDGESKLQVLNGNYRIPDSPKYSSSMTDLIRDMLQARPDDRPDITQVWFRVNEQLPINLQKSLPDRLPELLASNSHEGASLATNKSPPMPRRSPPPPPSSGEPKNTSQPSPASRAVGSGGALGAFWSSQHAKDTVVPEEKSKPIFDEEQSSHHISLKHDTIRPDNDPLSKNVTSANRVVNTQTHTAKSSIHGKPHNPDTGSSKDIEINFFQPKDHTSERRRSSVGNTMNFQDQTFISFVADFDTTKFNSSGLGNKSEKEEALEAELEKLKEQLKEAKLEKAEITSKYEKLSSICRSQRQELQDLKQALAVKTPSPSKEGLRTSPGIRSPASVREKIGGTVREHQQDKTEWKTPSSEPKSWKAFPDEPQKLNSLSADNTTKSVRTRNGQQHNKHDAQLATDFDTWGFGTDNFSAVGTGSPQMLRPSEGSNIEGFSEAKAFENKSTSQPAGWAGF*	696

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan5g0688	695	MobiDBLite	consensus disorder prediction	578	596	-	-
	Lan5g0688	695	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	152	164	IPR008271	GO:0004672\|GO:0006468
	Lan5g0688	695	CDD	STKc_GAK_like	26	298	-	-
	Lan5g0688	695	MobiDBLite	consensus disorder prediction	550	637	-	-
	Lan5g0688	695	MobiDBLite	consensus disorder prediction	375	407	-	-
	Lan5g0688	695	MobiDBLite	consensus disorder prediction	317	447	-	-
	Lan5g0688	695	Coils	Coil	494	549	-	-
	Lan5g0688	695	MobiDBLite	consensus disorder prediction	657	695	-	-
	Lan5g0688	695	MobiDBLite	consensus disorder prediction	408	447	-	-
	Lan5g0688	695	MobiDBLite	consensus disorder prediction	680	695	-	-
	Lan5g0688	695	Gene3D	Transferase(Phosphotransferase) domain 1	11	306	-	-
	Lan5g0688	695	PANTHER	SERINE/THREONINE PROTEIN KINASE	1	680	-	-
	Lan5g0688	695	MobiDBLite	consensus disorder prediction	330	346	-	-
	Lan5g0688	695	SMART	serkin_6	27	291	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan5g0688	695	Pfam	Protein kinase domain	28	289	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan5g0688	695	SUPERFAMILY	Protein kinase-like (PK-like)	28	343	IPR011009	-
	Lan5g0688	695	MobiDBLite	consensus disorder prediction	612	627	-	-
	Lan5g0688	695	ProSiteProfiles	Protein kinase domain profile.	27	297	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan5g0688	695	PANTHER	NUMB-ASSOCIATED KINASE, ISOFORM A	1	680	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan5g0688	Lan-Chr5	17096879	17101580	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan5g0688	26	292	Miscellaneous Gene Families	AT2G34180	29.537	3.02e-20	92.8

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NAK	Lan5g0688		Pkinase	2.6e-39	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan5g0688	K08853		-	gmx:100808507	1005.74