Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0682 ATGGAACTTGGTCTGAGTTTAGGAGATTCTTCAAGACCCTTTGTTGGGTTCATTGAAAAGCCTAGTGAAGTTTCCAATCAACATGGTTTAGGCTTCAACACTACCTTATCAATTGGTCCAATCATTACTACACAAAGAGATCAACCACAACAACATGAACAAGAACAATTAGAAACAAAACCAAGCAACAACAATAATAGTGGTCATAGTGTATCTCCCAAGAATAATAATGTCATGCATCAACTTGATCTTCTTCCAAGGCTCTCTCTTCCATGGCTCCCTCCTTCTCAAAATGCTGAGTTAGGAGGTTGTTCTAGAAGCTTGGATGTAAACACCCTTCCGGCGGCGGCAGCTGAGGATGAGGTGGAGGAAGGGGCGGCGCTATCGTCGTCCCCCAACAGTGCAGCATCGCCTCTTCAGATGGATCTTTCCATATACAACGCAAGAGGAGGGAGTTTGAGTGGTTCAGGAGGGAATTATTATTACAACGGTGGTGGTGGTGGTGATAGTGGCGGCAAGAGAGATTCTGATGATGGTGATGAAGATGACAACGTTGGTGGTAGCTCTAGGAAGAAGCTCAGACTCTCGAAGGAACAATCAGCCTTCCTTGAAGATAGTTTCAAAGAGCATAGCACTCTTAACCCTAAACAAAAGCTTGCTCTTGCTAAACAACTCAATCTTCGTCCTCGCCAAGTTGAAGTATGGTTTCAAAACAGAAGAGCAAGAACTAAGTTGAAGCAAACAGAGATGGATTGTGAGTACTTGAAGAGGTGTTGTGAGACACTAACAGAAGAGAATAGAAGACTACACAAGGAGCTTCAAGAATTAAGGGCTTTGAAGACTTCAAAACCATTCTACATGCAATTACCAGCAACTACCTTAACTATGTGCCCTTCTTGTGAAAGAGTAGCCACTAATTCCACATCTACTTCCTCTGCCACTCCTTCTAGTGCCACCAACAATGCTAATTCAGGGGCCATGGTCACTGCCAAAACTAGTAATGATTCCAAAGTTGTTGGATTCCCTCTTGGCAAACCCATGTTTCATTCATTTTCTCACACCACTCAACCTTATACACACTAA 1083 0.4321 MELGLSLGDSSRPFVGFIEKPSEVSNQHGLGFNTTLSIGPIITTQRDQPQQHEQEQLETKPSNNNNSGHSVSPKNNNVMHQLDLLPRLSLPWLPPSQNAELGGCSRSLDVNTLPAAAAEDEVEEGAALSSSPNSAASPLQMDLSIYNARGGSLSGSGGNYYYNGGGGGDSGGKRDSDDGDEDDNVGGSSRKKLRLSKEQSAFLEDSFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEMDCEYLKRCCETLTEENRRLHKELQELRALKTSKPFYMQLPATTLTMCPSCERVATNSTSTSSATPSSATNNANSGAMVTAKTSNDSKVVGFPLGKPMFHSFSHTTQPYTH* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0682 360 Coils Coil 259 282 - -
Lan5g0682 360 CDD homeodomain 190 247 IPR001356 GO:0003677
Lan5g0682 360 Gene3D - 194 244 - -
Lan5g0682 360 MobiDBLite consensus disorder prediction 166 193 - -
Lan5g0682 360 Pfam Homeodomain 190 244 IPR001356 GO:0003677
Lan5g0682 360 Pfam Homeobox associated leucine zipper 246 280 IPR003106 GO:0006355|GO:0043565
Lan5g0682 360 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 2 324 - -
Lan5g0682 360 ProSiteProfiles 'Homeobox' domain profile. 186 246 IPR001356 GO:0003677
Lan5g0682 360 PANTHER - 2 324 - -
Lan5g0682 360 ProSitePatterns 'Homeobox' domain signature. 221 244 IPR017970 GO:0000981|GO:0006355
Lan5g0682 360 SUPERFAMILY Homeodomain-like 176 247 IPR009057 -
Lan5g0682 360 SMART HOX_1 188 250 IPR001356 GO:0003677
Lan5g0682 360 SMART halz 246 289 IPR003106 GO:0006355|GO:0043565
Lan5g0682 360 MobiDBLite consensus disorder prediction 305 324 - -
Lan5g0682 360 MobiDBLite consensus disorder prediction 171 193 - -
Lan5g0682 360 MobiDBLite consensus disorder prediction 45 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0682 Lan-Chr5 16922799 16925124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0682 180 303 Homeobox Transcription Factor Family AT4G37790 79.839 6.05e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan5g0682 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0682 K09338 - gmx:100778742 412.535