Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0670 ATGTCTCACAGAAAGATTGAGATGAAATTGATGGAGAACAAAAGCTCTAGGCTGGTCACCTTTTCTAAGCGCAAAAGTGGCCTTTTTAAGAAAGCAATGGAGCTATCCATTCTTTGTGGTGTTGAAGTTGTTGTTCTTTTATTTTCTGTTGGTGGCAAGGCTTACTCTTTTGGTCATCCAAGCATTGAGGCTGTGACTAAGAAGTTCCTTCACCAAGGAGAAGGATCACATGTGAGTCATGGTGAGTCCTCAAATGATGATGGCAATATTGGTAAGCTTAGCCATCAACTTCAAGAGCTGAAAGACCAGATTCAAGTGGAGAAGGATAAGAAGAAGGAGCTTGATAAAGCTCTTAGCAAATACAAGTTTATCAACGGAAAACTTCCCATTGATAATCTTAGTTTTGAGGAGCTTGTGGAGTTCAAGGCTTCCTTGGTTGAGGCCCAAGATAATATGCCAGCATCCAATGATGAGTTGGAGGTAGCATCATCTTTGCTTCTTTTTCGTGAGAATCGCATGTATGAGACTGGGATTTGA 537 0.4097 MSHRKIEMKLMENKSSRLVTFSKRKSGLFKKAMELSILCGVEVVVLLFSVGGKAYSFGHPSIEAVTKKFLHQGEGSHVSHGESSNDDGNIGKLSHQLQELKDQIQVEKDKKKELDKALSKYKFINGKLPIDNLSFEELVEFKASLVEAQDNMPASNDELEVASSLLLFRENRMYETGI* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0670 178 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan5g0670 178 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lan5g0670 178 Coils Coil 90 117 - -
Lan5g0670 178 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 173 - -
Lan5g0670 178 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Lan5g0670 178 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Lan5g0670 178 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan5g0670 178 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan5g0670 178 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan5g0670 178 PANTHER MADS BOX PROTEIN 2 173 - -
Lan5g0670 178 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0670 Lan-Chr5 16500364 16500900 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0670 1 168 Type I MADS-box Gene Family AT2G34440 33.136 2.43e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan5g0670 SRF-TF 3.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0670 - - lang:109341334 320.857