Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0625 ATGAATAATAACAACAACAACTTCAGAAATGGTAACAACACAACCCAGGCTTGTGCTGCATGCAAATACCAACGTAGGAAATGTGCACCTGATTGCATTCTTGCACCATATTTCCCTCATGATCGCCAAAGACAATTCCTCAATGCCCATAAATTATTTGGAGTTAGCAACATAACCAAGATTATCAAGGTTCTTGAGCCTCACGAAAAAGATCAAGCGATGCGTACGATTATTTACCAATCCGATATGCGCGCTAATGACCCAGTTGGAGGTTGTTATAGGTACATCCAAGTCCTTCATAATCAGATCGAGTATCATCGCACTGAACTTGAATTAGTCCTTCAAAATCTTGCGATTTTACGTGCACAAGCTCATCACCAACAACAACATCCACAGCATGTTTATGATCCAACATTAACTAATGTTAATGTTGGTATCAATGGAGAGGATGTTATGAGTGCAGGTGAATTAGGTGATCCTTTGAGCTTCTATAACTCGGCTGCCGCGCAGAATCATTACCATTACATTCAACAAGTTCCACAACAAGAACAATATATTATGTTACAAGAGAGTAATGAGAATAATTGCAGTAATAATAATAACAACACTATGTTGCAAGATCACGTTAATTCGTGGGCTATGCAGAACTCAATGTCCCTTTCCTCTTTGTCATTGCAAGGACAAAGTAGTAATGCTAGTCTTGGTGATGAATATGATCATAGATCAATGCTTGAGATGCCTTCTGAAGATCGAAATGATATCAGATTCGAGGTAGAAGATCTTGGTCATCACAGTGATGATGCAGTTTTGTTTAAGATAGATGAAGCAGTAATAAATGCAGAGGCTGATAGCATCCAACAAGCTCAAGATCATGATCTGAAAGGTGCAGCAACTTTATTTACTCTCACAAATTGTAATAGCTGA 924 0.3842 MNNNNNNFRNGNNTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKVLEPHEKDQAMRTIIYQSDMRANDPVGGCYRYIQVLHNQIEYHRTELELVLQNLAILRAQAHHQQQHPQHVYDPTLTNVNVGINGEDVMSAGELGDPLSFYNSAAAQNHYHYIQQVPQQEQYIMLQESNENNCSNNNNNTMLQDHVNSWAMQNSMSLSSLSLQGQSSNASLGDEYDHRSMLEMPSEDRNDIRFEVEDLGHHSDDAVLFKIDEAVINAEADSIQQAQDHDLKGAATLFTLTNCNS* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0625 307 ProSiteProfiles LOB domain profile. 16 117 IPR004883 -
Lan5g0625 307 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 230 - -
Lan5g0625 307 Pfam Lateral organ boundaries (LOB) domain 17 112 IPR004883 -
Lan5g0625 307 PANTHER LOB DOMAIN-CONTAINING PROTEIN 22 11 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0625 Lan-Chr5 12871775 12873551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0625 16 254 AS2 family AT3G13850 46.667 3.26e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lan5g0625 LOB 9.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0625 - - pvu:PHAVU_010G138500g 348.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0625 5 12871775 12873551 Lan2g0400 2 4054616 4056480 LSH
Lan6g2144 6 31889667 31890248 Lan5g0625 5 12871775 12873551 PCT
Lan5g0625 5 12871775 12873551 Lan6g2144 6 31889667 31890248 PCT