Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0613 ATGGCTTCCTTCATGAATGTTAATGTAACAGGATATGCAGAAGATTTCTCATGGACTTGTCTGAAAGATTTTGATATCACTTCTTTATGCTATCAAAGAAGCATAATAGACATTGTAAATCTAGTTTTCATCTCTGCTTTCTTCACTTCTTTGCTTATCAGTATAATCAAAAGATGTTCTGAAAACAGTAGCAACAAAAAGAAATGGGTTTTCCAAGTTGCTTCAATCTTCTGTGCTCTTGTTAGCATTGCATTTGTTAGTATTGGCTTGTGGAATTTAGTAGCCAAAAGTGTTAACTTCAAGCATTTGAGTTTGTTAGATTGCATTGTAAAAGGGTTCATTTGGATTTCTTTTACACTTTCTTTGCTTCTTCAGAGAAACAAATGGATCGAAGTTGTAAACTCTATTTGGTGGGGTTCAATCTGTGTATTAGTTTCAACTCTCAACATTGAAATTCTGATCAAAGAGCATGCAATTGAAATTTTTGACTTGGTACAATGGGTTATACACTTCTTACTTCTTTTCTGTTCCCTCCAAAATCTTGGATATTTTATCAGTCAAACTCTTTCGGATACACCGAGTTTATCCGAGCCATTGCTAGCTCGAAAAGTTGAAAATAACCTTACTGGACTAGCTCATGCTTCCTTGCTCACCAAGTTATCTTTCTCTTGGGTTAATTCCTTACTCAGTTTGGGTTACTCTAAACCGCTTGCACTTGAAGACATTCCTTCTCTTGTCTCTGAAGATGAAGCTGACTCGGCCTACCGAAAATTCATGCAAGCATGGGTATCCCTTTCAAGGGAAAGGGGCAAGAACAATACTAAAAACTTGATTTTTTGGTCTGTAGTTAGAACTTACTCAAAAGAGAACATATTGAATGGATTTTATGTATTAATGAGAACTATTGCTGTTGTAATTTCTCCTCTAATACTCTATGCTTTTGTAAACTACTCAAATAGAACTGAGGCAGAACTCAAAGAAGGTATTGTTATACTTGGTTTTCTGATTCTGAGCAAAGTGGTTGAATCTTTGTCCCAAAGACATTGGTGTTTTAACTCAAGGAGGTCCGGAATGAAAATGAGATCAGCTTTGATGGTTGCAATATATCAAAAACAGCTCAAGCTTTCTAGCTCTGCTAGGAGAAGGCACTCGGCAGGTGAAATCGTAAATTACATCGCGGTTGATGCATATCGTATGGGAGAATTCCCGTGGTGGTTTCATTTATTATGGTCTTCTGTGTTGCAAATATTTCTGTCGATTAGTGTCCTTTTCGGCGTTGTGGGCCTTGGCGCTCTTCCGGGTTTAGTCCCTCTTCTCATTTGTGGAATTCTAAATGTACCATTTGCAAGGATCATACAAAATTGCCAAGCACAATTTATGATTGCACAAGACGAGCGTCTTAGATCGACTTCAGAAATTCTAAATAGCATGAAAATCATTAAGTTGCAATCATGGGAGGACAAGTTCAAGGACTTAATCGAAACGCTACGTTCTAATGAGTTCATATGGTTGTCTAAGGCACAAATCATTAAAGCCTATGGATCATTTCTTTATTGGATGTCTCCTACCATTGTTTCTGCAGTTATTTTCCTTGGATGTGTACTTTTACATAGTGCCCCATTGAATGCTGGAACAATTTTCACAGTTCTTGCAACCTTGAGAATTATGTCCGAACCTGTTCGTATGATCCCGGAGGCATTGTCTGTTTTGATCCAAGTTAAGGTCTCTTTCGATCGCCTCAATACCTTTATGCTTGATGATGAGCTAAACAACGACGATGTCGGAAGAGATATAAAGAAACTTTCAGTTAATGGTAATGCTGTGGAAATTCAAGGTGGAAGCTTCATTTGGCATCAGGAATCGTTGTCCCCGACTTTAACAAATGTGAATTTAGAAATGAAAAGGGGACAGAAAATAGCAGTTTGTGGACCAGTTGGTGCTGGAAAATCATCTCTATTGTATTCAATACTTGGAGAGATTCCAAAACTCTCCGGAACAGTTAAAATAGATGGCACCCTGGCCTATGTTTCACAAACTTCATGGATACAAAGCGGGACGATTCGAGCTAATATACTATTTGGAAAGCCAATGGAAAAAACAAGATATGAGAATACCATTAAAGTTTGTGCCTTAGAAAAGGATCTTAATGATTTTTGCTATGGAGATCTCACAGAAATAGGCCAGAGAGGGATTAACATGAGTGGAGGACAAAAACAAAGGATTCAACTAGCTCGAGCCGTATACAACGATGCTGACATCTATCTCCTCGATGATCCATTCAGTGCAGTTGATGCTCACACTGCTTCTACTCTGTTCAATGACTGTATCGTGACCGCTCTAAGACAGAAAACCGTCATTTTAGTCACTCATCAAGTAGAGTTTTTGTCCGAGGTTGATAAAATCCTGATAATGGAGGGAGGAAAAGTTACTCAATCGGGTAATTATGAAGATCTCATGACAGCTGGAACAGCCTTTGAACAACTTGTGAGTGCTCACAAAGATGCAATGAAAGAATTGGATCAAAATAATGAAAACAATAAAAGTTCTGAAAATGAAATTATAGTTCATACAGAAGAATCTCAAGATGAGTGGATTTCTAGAAATGCGCAACTCGGGATACAGCTTACAGAAGAGGAAGAAAAAGAGATCGGTGATGCTGGATGGAAGCCATTCTGGGATTATATCACTTTTTCAAGAGTCTCAACCTTGCTGTGTTTGGTGATATTAGCACAATCTGTATTTGTTGCTTTGCAGACTGCATCGACATTTTGGCTCGCCCTAGCTATTGAAATGCCGAAAGTAACAAGTGGCACCTTGGTTGGAGTTTACTCAATAATTTCGTTTATAAGTTCTGTGTTTGTATTTCTAAGGTCTTTCTCTGGTGCACATCTTGGACTAAAAGCTTCTATAGCCTTCTTCTCTAGTTTCACTAAGGCGATTTTTGCTGCTCCTATGTTGTTCTTTGACTCAACCCCTGTTGGAAGGATTTTAATCCGCGCCTCATCAGATTTGAGTATTTTGGACTTTGATATACCTTATTCCGTTCTTTTTGTAGCATCTGTAACTATTGAAGTTCTGGTGACAATTGGTATAATGGCTTCAGTCACATGGCAAGTTCTCATCGTCGCTATTCCAGCTATGATCGCATCGAAATATGTTCAGGGATACTATCAAGCCTCTGCAAGGGAACTAATACGAATCAACGGAACCACAAAAGCGCCGGTCATGGATTTTACAGCTGAGACATCACTTGGAGTGGTGAATGTAAGAGCATTCAACATGGTGGATAGATTTTTCAAGAAGTACCTAAAGCTTGTAGACACAGATGCAACACTATTCTTTCATTCTAATGTTACCATGGAATGGTTAGTTTTAAGGATTGAGGTACTTCAAAATTTCACAGTCTTCACTGCAGCTTTATTACTTATTCTACTTCCTAAGGGATACATACCAACAGGTCTTGTAGGACTGTCTCTTTCTTATGCTTTCTCATTGACCGGATCTCAAGTCTTTTGGACTAGAATGTTCTGCAATCTGTCAAACTTTATTATCTCTGTTGAAAGGATCAAACAATTCATTCATATACCAGCCGAGCCATCTGCCATTGTCGTGGATAACAGGCCTCCATCATCATGGCCTTCCAAGGGTAGGATTGATCTTCAATCCGTAGAGATTAGATATCGTCCGAACGCTCCATTAGTCCTGAAGAGTATCACTTGTACGTTTAACGAAGGGGATAGAGTTGGAGTTGTAGGAAGGACTGGAAGTGGAAAAACTACACTAATAAGTGCTTTGTTTCGCTTAGTTGAGCCTGCAAGTGGTAGTATCCTTATTGATGGGATTAACATATGCTCAATTGGGTTGAAGGATTTGAGAATGAAGCTAAGTATTATCCCTCAAGAGCCAACACTTTTCAAAGGCAGCATTAGAACAAACTTGGACCCCCTAGGCCTTTACTCAGATGATGAAATATGGAAGGCTTTAGAGAAATGCCAGCTTAAGGAAACAATCAGAAGTCTACCAAGTCTCCTAGACTCTTCAGTGAGTGATGAAGGTGGAAATTGGAGTTTGGGACAAAGGCAACTGTTTTGTCTAGGAAGAGTAATACTTAAAAGAAGCAAAATTCTTGTTCTTGATGAAGCTACTGCATCCATTGACTCTGCTACAGATGCAACTCTACAAAGAGTTATAAGGCAAGAATTTGCAGATAGCACAGTTATAACAGTTGCTCACAGAGTTCCAACTGTAATAGATAGTGACATGGTCATGGTTCTTTCTTATGGGAAAGTAGTAGAATATGATGAGCCTTCTAAGCTATTGGGAACCAACTCTTCATTCTCTAAGCTGGTAGCTGAATATTGGTCTAGCTGCAGCAAGAAATAA 4383 0.3876 MASFMNVNVTGYAEDFSWTCLKDFDITSLCYQRSIIDIVNLVFISAFFTSLLISIIKRCSENSSNKKKWVFQVASIFCALVSIAFVSIGLWNLVAKSVNFKHLSLLDCIVKGFIWISFTLSLLLQRNKWIEVVNSIWWGSICVLVSTLNIEILIKEHAIEIFDLVQWVIHFLLLFCSLQNLGYFISQTLSDTPSLSEPLLARKVENNLTGLAHASLLTKLSFSWVNSLLSLGYSKPLALEDIPSLVSEDEADSAYRKFMQAWVSLSRERGKNNTKNLIFWSVVRTYSKENILNGFYVLMRTIAVVISPLILYAFVNYSNRTEAELKEGIVILGFLILSKVVESLSQRHWCFNSRRSGMKMRSALMVAIYQKQLKLSSSARRRHSAGEIVNYIAVDAYRMGEFPWWFHLLWSSVLQIFLSISVLFGVVGLGALPGLVPLLICGILNVPFARIIQNCQAQFMIAQDERLRSTSEILNSMKIIKLQSWEDKFKDLIETLRSNEFIWLSKAQIIKAYGSFLYWMSPTIVSAVIFLGCVLLHSAPLNAGTIFTVLATLRIMSEPVRMIPEALSVLIQVKVSFDRLNTFMLDDELNNDDVGRDIKKLSVNGNAVEIQGGSFIWHQESLSPTLTNVNLEMKRGQKIAVCGPVGAGKSSLLYSILGEIPKLSGTVKIDGTLAYVSQTSWIQSGTIRANILFGKPMEKTRYENTIKVCALEKDLNDFCYGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTASTLFNDCIVTALRQKTVILVTHQVEFLSEVDKILIMEGGKVTQSGNYEDLMTAGTAFEQLVSAHKDAMKELDQNNENNKSSENEIIVHTEESQDEWISRNAQLGIQLTEEEEKEIGDAGWKPFWDYITFSRVSTLLCLVILAQSVFVALQTASTFWLALAIEMPKVTSGTLVGVYSIISFISSVFVFLRSFSGAHLGLKASIAFFSSFTKAIFAAPMLFFDSTPVGRILIRASSDLSILDFDIPYSVLFVASVTIEVLVTIGIMASVTWQVLIVAIPAMIASKYVQGYYQASARELIRINGTTKAPVMDFTAETSLGVVNVRAFNMVDRFFKKYLKLVDTDATLFFHSNVTMEWLVLRIEVLQNFTVFTAALLLILLPKGYIPTGLVGLSLSYAFSLTGSQVFWTRMFCNLSNFIISVERIKQFIHIPAEPSAIVVDNRPPSSWPSKGRIDLQSVEIRYRPNAPLVLKSITCTFNEGDRVGVVGRTGSGKTTLISALFRLVEPASGSILIDGINICSIGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKALEKCQLKETIRSLPSLLDSSVSDEGGNWSLGQRQLFCLGRVILKRSKILVLDEATASIDSATDATLQRVIRQEFADSTVITVAHRVPTVIDSDMVMVLSYGKVVEYDEPSKLLGTNSSFSKLVAEYWSSCSKK* 1461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0613 1460 ProSitePatterns ABC transporters family signature. 733 747 IPR017871 GO:0005524
Lan5g0613 1460 Gene3D - 585 857 IPR027417 -
Lan5g0613 1460 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 291 572 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lan5g0613 1460 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 67 1453 - -
Lan5g0613 1460 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 906 1168 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lan5g0613 1460 Pfam ABC transporter transmembrane region 306 559 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lan5g0613 1460 Pfam ABC transporter transmembrane region 936 1164 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lan5g0613 1460 SUPERFAMILY ABC transporter transmembrane region 889 1198 IPR036640 GO:0005524|GO:0016021
Lan5g0613 1460 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 608 831 IPR003439 GO:0005524
Lan5g0613 1460 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1220 1452 IPR003439 GO:0005524
Lan5g0613 1460 CDD ABC_6TM_ABCC_D2 900 1193 IPR044726 GO:0140359
Lan5g0613 1460 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 67 1453 - -
Lan5g0613 1460 Gene3D ABC transporter type 1, transmembrane domain 266 584 IPR036640 GO:0005524|GO:0016021
Lan5g0613 1460 Gene3D ABC transporter type 1, transmembrane domain 869 1199 IPR036640 GO:0005524|GO:0016021
Lan5g0613 1460 SUPERFAMILY ABC transporter transmembrane region 279 586 IPR036640 GO:0005524|GO:0016021
Lan5g0613 1460 Coils Coil 832 852 - -
Lan5g0613 1460 CDD ABCC_MRP_domain1 608 808 - -
Lan5g0613 1460 Gene3D - 1201 1452 IPR027417 -
Lan5g0613 1460 SMART AAA_5 635 808 IPR003593 -
Lan5g0613 1460 SMART AAA_5 1244 1437 IPR003593 -
Lan5g0613 1460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1208 1451 IPR027417 -
Lan5g0613 1460 Pfam ABC transporter 626 760 IPR003439 GO:0005524
Lan5g0613 1460 Pfam ABC transporter 1235 1383 IPR003439 GO:0005524
Lan5g0613 1460 CDD ABC_6TM_ABCC_D1 292 580 IPR044746 GO:0140359
Lan5g0613 1460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 601 830 IPR027417 -
Lan5g0613 1460 CDD ABCC_MRP_domain2 1216 1436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0613 Lan-Chr5 12516812 12523787 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0613 608 853 Calmodulin-binding Proteins AT2G36910 26.316 1.14e-21 100