Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0610 ATGGCATCAAAATCATCAAACAAGGGACAAGGATTAATGGAAGAGGGTGAAAGAAGGTATTCATGTAGATTTTGTGATAAGAAATTCTCTGCTAAACAAGCCTTAGGTGGACATCAAAATGCTCACAAGAATGAAAGAGCAACATTCAAAAGAAGAAATATTCTCAACATGGCTTCTACTTATATAGATTCATATCCCAATCTTCATTCATATTGCTACCCTGAATTTACTTCTAAAGGTAACCAAATGCTAGGGGTTCAACCACAATCATTGATTCATAAAAATGCAAACTTGTTCATGTTTAAAGGAAGACCACAAAGTTCAAGGCTAGAACCAAAGTTTGATGTGAATTTTGGTCAAGAACAATATTCATCAAGGAAGGATGAACTTAATTTCATGCACTTGCTTGGAATACCTCAATGTGTAGGGTCAAAACCTCCATTACAATCTAGTTTATGTGATGATAAGAGTTATGATCAAGATAATAGTTCTCTAAGAAGACCTCATAGTGAATCTATAGAGGAACTTGATTTGACACTCAAACTCTGA 549 0.3443 MASKSSNKGQGLMEEGERRYSCRFCDKKFSAKQALGGHQNAHKNERATFKRRNILNMASTYIDSYPNLHSYCYPEFTSKGNQMLGVQPQSLIHKNANLFMFKGRPQSSRLEPKFDVNFGQEQYSSRKDELNFMHLLGIPQCVGSKPPLQSSLCDDKSYDQDNSSLRRPHSESIEELDLTLKL* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0610 182 Gene3D Classic Zinc Finger 3 66 - -
Lan5g0610 182 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 3 182 IPR044246 GO:0009788
Lan5g0610 182 ProSiteProfiles Zinc finger C2H2 type domain profile. 20 47 IPR013087 -
Lan5g0610 182 SUPERFAMILY beta-beta-alpha zinc fingers 16 47 IPR036236 -
Lan5g0610 182 ProSitePatterns Zinc finger C2H2 type domain signature. 22 42 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0610 Lan-Chr5 12445875 12446423 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0610 14 74 C2H2 Transcription Factor Family AT5G01860 48.387 7.38e-11 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan5g0610 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0610 - - lang:109347005 376.711