Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0600 ATGCCGGTGCTTCGTAGTGGAGTCCGAAGGGGTCGGGCAAGAGCAAATAATCAGAACCGGAATCAGAATCAGAATCAGAATCGGAATCAGAATTCTCCGGTGGTTGAGGTGGAAGCGATTGCAACTAGAACACGGAGACGCCGTGCAGCAGCGGCGGCAGAAGCGGTGGTGCCGGAAAACAATAATAAGAAGAAGAAACAACAGCAACAGAAGAAGTTGGTTGTCAATGAGAAGGTAACTGTACCGGAGGAGGAGGAAGGTGGTCGTGCTGGTGTTGGTGGCGACGGCAGAGGTGGAGGAGGAGAGGTTGGTGGTGGTGGTAGGGCGGAGAAGGAGGGGGGGGAAGAGGTAAAGGAGAAAAAGATGGATGGTCTTGATAGCGGAGGTCGCAGCAACGATAAGGCCAATGCCGGTGAAGATGAAGGGAACCCTACTCCTCTTCCTGAAAAGGTTCAAATAGGTGGTTCTCCTTGGTATAAATTAGAAAGAAAACTTGGCAAGGGTGGATTTGGGCAAGTATATGTTGGTCGACGTGTTACTGGTTCAAATTTGAGTGAGAGAACTGGACCTGGAGCTGTAGAGGTTGCATTAAAACTTGAGCACAAAACTAGTAAAGGATGCAACTATGGACCACCTTATGAGTGGCAAGTGTATAATACTCTTGGTGGCAGTCATGGTGTGCCACAAGTACATTACAAGGGCAGGCAAGGTGACTATTATATCATGGTTATGGATATTCTTGGACCTAGTTTGTGGGATGTTTGGAGTAATAACAATCACATCATGTCCACTGAAATGGTTGCTTGTATTGCTATTGAAGCAATATCCATCTTGGAGAAGATACATTCTAGAGGGTATGTGCATGGGGATGTGAAGCCTGAAAATTTTCTACTTGGTCCTCCTGGGACACCTGATGAGAAAAAATTGTTCCTTGTAGATCTTGGATTAGCTACTAAATGGCGGGATAGTACGACAGGTTTGCATGTAGATTATGACCAAAGGCCAGATGTCTTTAGGGGCACTGTCCGTTATGCTAGTGTGCATGCACATTTAGGAAGAACCGGAAGCAGGAGGGATGATTTGGAATCTCTTGCTTATACACTGATTTTTCTTCTTCGAGGTCGTCTTCCTTGGCAGGGATACCAGGGAGACAACAAGGGATTTCTTGTTTGCCGGAAGAAGATGGGAACATCTCCAGAGACGTTATGTTCCTTTTGTCCCCATCCTTTTAGTCAGTTTGTTGAACATGTGGTCAACTTAAAGTTTGATGAAGAGCCTAACTATGCAAAATACATTTCTCTATTTGATGGGATTGTTGGTCCCAATCCAAATATTAGGCCACTTAATACAGAAGGGGCACAGAAGCTTATTGGTCATAAGAGAGGCCGGTTGGCAATGGAAGAAGAAGATGACGAACAAGCAAAAAAGAAGATTCGTTTGGGTTTGCCAGCAACCCAGTGGATAAGTGTTTACAATGCGCGAAGACCGATGAAACAAAGATATCACTACAATGTGTCAGATCAAAGGCTATCCCAGCACATTGAGAAAGGAAATGAGGATGGCTTATTTATTAGCAGTGTTGCTGCAGCTCAGGACCTTTGGGCCATTATCATGGATGCTGGGACAGGTTTCAGTTCCCAAGTTTATGAAGTTTCCCAAGAATTTCTCCATAAGGAATGGATCATGGAGCAGTGGGAAAAAAATTACTACATCAGTTCTATTGCTGGAACTTCACATGGGAGCTCCCTAGTAGTGATGTCTAAGGGCACTCAGTATTTGCAGCAATCATACAAAGTCAGTGAATCATTTCCTTTCAAGTGGATTAACAAAAAATGGAAGGAGGGCTTTTATGTGACTGCTATGGCGACCTCAGCGTCCAGATGGGGAATAGTTATGTCTCGTGGTGCTGGATTTTCTGATCAGGTGGTTGAGCTAGATTTTCTGTATCCCAGTGAAGGAATTCACAAGCGGTGGGATGGTGGATATCGAATCACTGCCACTGCTGCAACTTCGGATCAAGCTGCTTTTGTCCTGAGTGTGCCAAGGAGGAGGCCCACGGACGAAACTCAAGAAACTCTCAGGACTTCTGCTTTTCCTAGTACGCATGTCAAGGAAAAATGGGCAAAGAATCTCTACATCGCCTCTGTTTGCTATGGTCGTACAGTTTCATGA 2172 0.4526 MPVLRSGVRRGRARANNQNRNQNQNQNRNQNSPVVEVEAIATRTRRRRAAAAAEAVVPENNNKKKKQQQQKKLVVNEKVTVPEEEEGGRAGVGGDGRGGGGEVGGGGRAEKEGGEEVKEKKMDGLDSGGRSNDKANAGEDEGNPTPLPEKVQIGGSPWYKLERKLGKGGFGQVYVGRRVTGSNLSERTGPGAVEVALKLEHKTSKGCNYGPPYEWQVYNTLGGSHGVPQVHYKGRQGDYYIMVMDILGPSLWDVWSNNNHIMSTEMVACIAIEAISILEKIHSRGYVHGDVKPENFLLGPPGTPDEKKLFLVDLGLATKWRDSTTGLHVDYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGDNKGFLVCRKKMGTSPETLCSFCPHPFSQFVEHVVNLKFDEEPNYAKYISLFDGIVGPNPNIRPLNTEGAQKLIGHKRGRLAMEEEDDEQAKKKIRLGLPATQWISVYNARRPMKQRYHYNVSDQRLSQHIEKGNEDGLFISSVAAAQDLWAIIMDAGTGFSSQVYEVSQEFLHKEWIMEQWEKNYYISSIAGTSHGSSLVVMSKGTQYLQQSYKVSESFPFKWINKKWKEGFYVTAMATSASRWGIVMSRGAGFSDQVVELDFLYPSEGIHKRWDGGYRITATAATSDQAAFVLSVPRRRPTDETQETLRTSAFPSTHVKEKWAKNLYIASVCYGRTVS* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0600 723 CDD STKc_CK1 159 435 - -
Lan5g0600 723 PANTHER - 105 696 - -
Lan5g0600 723 ProSiteProfiles Protein kinase domain profile. 159 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g0600 723 ProSitePatterns Protein kinases ATP-binding region signature. 165 198 IPR017441 GO:0005524
Lan5g0600 723 Gene3D Transferase(Phosphotransferase) domain 1 127 480 - -
Lan5g0600 723 SMART serkin_6 159 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g0600 723 MobiDBLite consensus disorder prediction 59 91 - -
Lan5g0600 723 MobiDBLite consensus disorder prediction 12 37 - -
Lan5g0600 723 MobiDBLite consensus disorder prediction 1 153 - -
Lan5g0600 723 ProSitePatterns Serine/Threonine protein kinases active-site signature. 286 298 IPR008271 GO:0004672|GO:0006468
Lan5g0600 723 MobiDBLite consensus disorder prediction 108 137 - -
Lan5g0600 723 Pfam Protein kinase domain 159 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g0600 723 SUPERFAMILY Protein kinase-like (PK-like) 159 440 IPR011009 -
Lan5g0600 723 PANTHER CASEIN KINASE-RELATED 105 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0600 Lan-Chr5 11941408 11948089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0600 130 383 AGC Kinase Gene Family AT3G08730 22.692 6.60e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Lan5g0600 Pkinase 2.2e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0600 - - gmx:100799630 1140.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0600 5 11941408 11948089 Lan9g0694 9 10118277 10120177 LSH