Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0568 ATGAGTGTGGTCGGATTTGATTTCGGTAATGAAAGCTGCATTGTTGCGGTTGCGAGGCAAAGGGGTATTGATGTCGTGCTCAATGACGAGTCCAAGCGTGAAACGCCTGCTATTGTATGCTTTGGTGATAAGCAACGTTTCATTGGCACTGCTGGGGCTGCAACCACTATGATGAACCCCAAGAATTCCATCTCACAGATTAAGAGGCTAATTGGTAAACAGTTTTCTGATCCCGAATTGCAGCGGGATCTCAAGTCATTGCCCTTTCATGTCACTGAAGGCCCTGATGGATATCCATTGATTCATGCACGCTACTTGGGTGAAGCTAAAGCATTTACCCCAATCCAAGTCTTTGGAATGATGTTGTCGAATCTTAAAGAAATTGCCGAGAAAAATCTCAATGCGGCAGTTATTGATTGTTGCATTGGAATCCCAGTTTATTTTACTGATCTTGATAGGAGGGCAGTCTTGGATGCTGCCACAATTGCTGGTTTGCGCCCACTTCACCTCATTCATGAAACTACGGCGACTGCCTTGGCCTATGGTATTTACAAGACTGATCTTCATGAAACTGATCAGCTGAATGTTGCCTTTGTCGACATTGGACATGCAAGCATGCAAGTTTGCATTGCCGGCTTCAAAAAGGGGCAGCTTAAAATACTAGCTCATTCATATGATAGGTCTTTGGGAGGGAGGGATTTTGATGAGGTTTTGTTCAATTACTTTGCTGCAAAATTTAAGGAGGAGTACAAGATTGATGTTTTCCAGAATGCCAGGGCATGTCTAAGGCTCAGGGCTGCTTGTGAGAAGCTGAAGAAGATGCTAAGTGCAAACCCCGAGGCACCTCTGAACATTGAGTGCTTGATGGATGAGAAGGATGTCAGGAGCTTCATCAAGCGCGACGACTTTGAGCAACTAAGTCTTCCAATTTTGGAACGGGTAAAGGGACCTTTGGAGAAGGCACTTGCTGAAGCTGGCCTTACGGTTGAAGATGTACACATGGTTGAGGTGGTTGGTTCAGGTTCTCGTGTACCAGCTATAAATAAAATATTGACGGAGTTTTTCAGAAAGGAGCCTAGGCGGACAATGAATGCTAGTGAATGTGTTGCTCGGGGTTGCGCTTTGCAATGTGCAATTCTTAGTCCAACATTTAGAGTACGAGAATTTCAGGTCAACGAAAGCCTACCTTTCTCTATCTCCCTTTCATGGAAGGGTTCTGGTCCGGATGCACAAGATAGTGGACCAGATAATCAGCTAAGTACAGTTGTTTTCCCCAAAGGCAATCCCATACCAAGTATCAAGGCACTGACATTCTACAGATCAGGAACATTTTCTGTTGATGTACAATATGGTGATGTGAGTGGGCTACAAGCACCTGCTAAGATTAGCACATATACTATTGGTCCTTTCCAAACTACAAAAAGTGAAAGGGCAAAGGTTAAGGTTAAAGTTCGATTGAATCTGCATGGAATTGTATCCGTGGACTTGGCAACTCTGTTGGAAGAGGAAGAAGTTGAGGTGCCAGTTTCCAAAGAACCAGTGGCAGAAAATACCAAGATGGAAACTGATGAAGCTCCTATCAATGCTGCTGTGCCTCCAACCTCCAATGACAGTGATGTTAACATGCAAGATGCTAAGGCTGATGATGGTACCACTGGTGTGGACAATGGTACCTCTGACAATGATACCAAGGTTCAGGCTCCCAAGAAAAAGGTTAAGAAAACGAACATTCCAGTAGCAGAATTAGTTTATGGAGCAATGGCACCTGTGGATGTCCAGAAAGCTGTAGAGAAGGAGTTTGAAATGGCTTTGCAAGATCGTGTGATGGAAGAAACAAAAGACAAGAAAAATGCTGTTGAGGCTTATGTGTATGACATGAGAAACAAGCTTAATGACAAATATGAAGAGTTTGTGACTGCTCCAGAGAAGGAAGGTTTTGTTGCCAAACTTCAGGATGTGGAAGACTGGCTATATGAGGATGGTGAAGATGAAACCAAAGGTGTATATGTTGCCAAACTTGAAGAACTGAAAAAGCAAGGTGATCCAATTGAAGAGCGTTATAAAGAATATACGGAGAGGGGTACAGTGATTGATCAGTTCATCTATTGCATTAATAGTTACAGAGAAGCCGCAGTGTCAAATGATCCCAAATTTGATCATATTGACATCAATGAGAAACAGAAGGTCTTAACTGAATGTGTTGAAGCTGAGAACTGGCTGAGGCAGAAGAAGCAGCAGCAGGATTCACTTCCAAAATATGCTAACCCTGTACTCTTGTCGGCTGAAATAAGAAAGAAAGCTGAGTCTGTTGATAGGTTCTGTAAGCCGATTATGACAAAACCAAAGCCAGCCAAGCCAGCTACTCCACCAACACCAGCAACCCCACCATCACAGGGTGGTGAGCATCAGCAACCTCAAGGGAATGCTAATGCCAACACTGATGAGAATGCGGGTGCTACCGGTAGTAAGGTCCCACCGGAATCTACTGAACCAATGGAGACTGGTAAGTCAGAAAATGCAGGCTCGGTGTAA 2532 0.4396 MSVVGFDFGNESCIVAVARQRGIDVVLNDESKRETPAIVCFGDKQRFIGTAGAATTMMNPKNSISQIKRLIGKQFSDPELQRDLKSLPFHVTEGPDGYPLIHARYLGEAKAFTPIQVFGMMLSNLKEIAEKNLNAAVIDCCIGIPVYFTDLDRRAVLDAATIAGLRPLHLIHETTATALAYGIYKTDLHETDQLNVAFVDIGHASMQVCIAGFKKGQLKILAHSYDRSLGGRDFDEVLFNYFAAKFKEEYKIDVFQNARACLRLRAACEKLKKMLSANPEAPLNIECLMDEKDVRSFIKRDDFEQLSLPILERVKGPLEKALAEAGLTVEDVHMVEVVGSGSRVPAINKILTEFFRKEPRRTMNASECVARGCALQCAILSPTFRVREFQVNESLPFSISLSWKGSGPDAQDSGPDNQLSTVVFPKGNPIPSIKALTFYRSGTFSVDVQYGDVSGLQAPAKISTYTIGPFQTTKSERAKVKVKVRLNLHGIVSVDLATLLEEEEVEVPVSKEPVAENTKMETDEAPINAAVPPTSNDSDVNMQDAKADDGTTGVDNGTSDNDTKVQAPKKKVKKTNIPVAELVYGAMAPVDVQKAVEKEFEMALQDRVMEETKDKKNAVEAYVYDMRNKLNDKYEEFVTAPEKEGFVAKLQDVEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKEYTERGTVIDQFIYCINSYREAAVSNDPKFDHIDINEKQKVLTECVEAENWLRQKKQQQDSLPKYANPVLLSAEIRKKAESVDRFCKPIMTKPKPAKPATPPTPATPPSQGGEHQQPQGNANANTDENAGATGSKVPPESTEPMETGKSENAGSV* 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0568 843 PANTHER HSC70CB, ISOFORM G-RELATED 1 842 - -
Lan5g0568 843 ProSiteProfiles Ig-like domain profile. 345 463 IPR007110 -
Lan5g0568 843 MobiDBLite consensus disorder prediction 777 843 - -
Lan5g0568 843 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 384 620 IPR029047 -
Lan5g0568 843 CDD HSPA4_like_NDB 2 381 - -
Lan5g0568 843 Gene3D Actin; Chain A, domain 4 230 313 - -
Lan5g0568 843 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 589 687 IPR029048 -
Lan5g0568 843 SUPERFAMILY Actin-like ATPase domain 195 380 IPR043129 -
Lan5g0568 843 Coils Coil 673 693 - -
Lan5g0568 843 Gene3D - 186 360 - -
Lan5g0568 843 Gene3D - 589 697 IPR029048 -
Lan5g0568 843 MobiDBLite consensus disorder prediction 523 570 - -
Lan5g0568 843 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Lan5g0568 843 PRINTS 70kDa heat shock protein signature 2 15 - -
Lan5g0568 843 PRINTS 70kDa heat shock protein signature 30 42 - -
Lan5g0568 843 PRINTS 70kDa heat shock protein signature 140 160 - -
Lan5g0568 843 PRINTS 70kDa heat shock protein signature 332 348 - -
Lan5g0568 843 PRINTS 70kDa heat shock protein signature 363 383 - -
Lan5g0568 843 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 584 IPR029047 -
Lan5g0568 843 Gene3D - 5 374 - -
Lan5g0568 843 PANTHER HEAT SHOCK 70 KDA PROTEIN 14 1 842 - -
Lan5g0568 843 Gene3D - 38 113 - -
Lan5g0568 843 Pfam Hsp70 protein 3 688 IPR013126 GO:0005524|GO:0140662
Lan5g0568 843 MobiDBLite consensus disorder prediction 797 823 - -
Lan5g0568 843 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 709 787 IPR029048 -
Lan5g0568 843 MobiDBLite consensus disorder prediction 782 796 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0568 Lan-Chr5 11347295 11352848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0568 4 683 Calmodulin-binding Proteins AT1G16030 29.489 1.74e-86 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0568 K09489 - gmx:100778196 1382.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0568 5 11347295 11352848 Lan9g0688 9 10052724 10062652 LSH
Lan5g0568 5 11347295 11352848 Lan2g0444 2 4821993 4827666 LSH
Lan10g0241 10 1525234 1530652 Lan5g0568 5 11347295 11352848 PCT
Lan3g0180 3 1158062 1163553 Lan5g0568 5 11347295 11352848 PCT
Lan5g0568 5 11347295 11352848 Lan10g0241 10 1525234 1530652 PCT
Lan5g0568 5 11347295 11352848 Lan3g0180 3 1158062 1163553 PCT