Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0564 ATGGACGACACCAATCCGGAACGAAATAGCAACACACATACCGATCATTATCCTTTGCTAATGGATAAGCTGGAAACTCACGATGTTCATGACCACATAATTGATATTACAAGAAACGACGAAGGTTCGTCAAGCTCATCTCATAATGATCAACACTCTGGAATGCGTATACTTCAGAATGATGATGAACTAAATGGCAGCACACAAGTCCCCACTCATCAAAGATCTTCGTTTTCTGCATCCAGATATAATTCTAGAAATTCCTCATCGTCAAGAAGCGAGGAATATGGTCATCACAGAAGGAACCCACTAAATTCTGGACTGTGGATTTCTGTGGAGCTTGTTGTCACTCTGAGTCAAATCATAGCATCTATTGTTGTCTTGTCAATATCGAGAAATGAAAACCCGCAAGCACCATTGTTTGCGTGGATTGTGGGTTATGCATCTGGCTGTGTTGCTACCCTTCCTATCCTTTACTGGCGATATCGAAACCATAATCAAAGTATTGAAGAAGATACCTCTCAACCATCTCAAGGATCTTTTGCAAGAAACCCTTCAGAACCTTCTTCATATACTGCCATCTCTGTTTCTCATGTTTCAGACGAAGAGAATAGTCGTGCTACAGAATCAGCTACAGGAAGTGCTAGAATTCCTGGACTCTTTAATTCTAGGTTTGATAGATTAGTAGAGCATTTCAAGATGGTATTGGATTGCTTCTTTGCAGTTTGGTTTGTTGTCGGCAATGTATGGATCTTCGGTGGTCACACCTCTCCTTCCGATGCTCCAAAATTGTATAGGTTATGTATAGTGTTTCTTACCTTCAGCTGCATAGGATATGCCATGCCATTTATACTATGTGCAACAATTTGTTGCTGCCTACCTTGCATAATTTCTATTTTGGGCATTCGGGAGGATTTTTCTCAAAATAGGGGAGCCTCGGCCGAATCTATTAATGCTCTGCCAATCTACAAGTTCAAAATGAAGGAAAACGAAAGCAGTGATGTTCAGGATGTCAGTACTGCAATAGATGAAGGTGGTGTTCTGGCTGCTGGGACAGAAAAGGAACGGTTGATATCAGGAGAAGATGCCGTTTGTTGCGTTTGCTTGGCAAAATATTTAGATGATGACGAGCTTCGGGAGTTGCCTTGCTTTCACGTCTTTCATGTCGAGTGTATCGACAAATGGTTAAAGATAAATGCATCATGTCCTCTTTGTAAAAGTGAAGTTGGTACAAGTAATGAACAGTCAACTTCAACCACAAACTCCGGCAGTCAGCAGTAG 1281 0.413 MDDTNPERNSNTHTDHYPLLMDKLETHDVHDHIIDITRNDEGSSSSSHNDQHSGMRILQNDDELNGSTQVPTHQRSSFSASRYNSRNSSSSRSEEYGHHRRNPLNSGLWISVELVVTLSQIIASIVVLSISRNENPQAPLFAWIVGYASGCVATLPILYWRYRNHNQSIEEDTSQPSQGSFARNPSEPSSYTAISVSHVSDEENSRATESATGSARIPGLFNSRFDRLVEHFKMVLDCFFAVWFVVGNVWIFGGHTSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISILGIREDFSQNRGASAESINALPIYKFKMKENESSDVQDVSTAIDEGGVLAAGTEKERLISGEDAVCCVCLAKYLDDDELRELPCFHVFHVECIDKWLKINASCPLCKSEVGTSNEQSTSTTNSGSQQ* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0564 426 CDD RING-H2_RNF111_like 364 406 - -
Lan5g0564 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 350 424 IPR013083 -
Lan5g0564 426 SMART ring_2 365 405 IPR001841 -
Lan5g0564 426 MobiDBLite consensus disorder prediction 407 426 - -
Lan5g0564 426 SUPERFAMILY RING/U-box 356 412 - -
Lan5g0564 426 ProSiteProfiles Zinc finger RING-type profile. 365 406 IPR001841 -
Lan5g0564 426 PANTHER PROTEIN, PUTATIVE-RELATED 6 420 - -
Lan5g0564 426 MobiDBLite consensus disorder prediction 63 100 - -
Lan5g0564 426 MobiDBLite consensus disorder prediction 169 191 - -
Lan5g0564 426 Pfam Ring finger domain 365 406 IPR001841 -
Lan5g0564 426 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 6 420 - -
Lan5g0564 426 MobiDBLite consensus disorder prediction 63 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0564 Lan-Chr5 11274495 11279680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0564 1 417 C3H Transcription Factor Family AT1G80400 54.695 5.56e-164 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0564 - - gmx:100819729 608.986