Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0547 ATGGCACAAATTTTGCTTCATGGGAATCTACATGCTACCATCTTTGAGGTGGATAGGCTCAAATCTGAGGGTGGTGGTGGTGGTGGCAATTTTTTGAGCAAGATCAAGCAGAACATTGAGGAGAAAGTCGGTATTGGAAAAGGAGTTACTAAACTCTATGCAACCATTGATCTGGAGAAGGCAAGAGTGGGAAGGACCAGAATTATAGAAAATGAAGAGAATAATCCCAAATGGTACGAGTCTTTTCACATTTACTGTGGCCACTCGGCTTCAAACATTATATTCACCGTGAAAGATGATAATCCTATTGGAGCCTCTTTAATTGGAAGAGCATATGTACCTGTTGGGGAGGTTTTGGATGGTGAGGAAATAGATAGATGGGTTGAACTCTTGGACGAGGATAAAAATCCAATACAACAGGGTTCAAAGATCCATGTGAAGCTTCAATATTTTGATGTCGGAAAAGACCTCAACTGGGCTCGGGGCATTAGAAGTGCTAAATTTCCGGGAGTTCCCTATACTTTCTTCTCGCAGAGACAAGGTTGCAAGGTTACTCTTTACCAAGATGCTCATGTGCCTGATAACTTTGTTCCTAAAATACCACTTTCTGGAGGCAAGAATTATGAACCTCATAGGTGTTGGGAGGATATTTTTGATGCAATCACCAATGCAAAACACATGATATACATTACCGGCTGGTCTGTGTATACTGAGATTTCCTTGGTAAGGGATTCTAGGAGGCCAAAGCAAGGGGGAGATGTAACACTTGGTGAGCTTCTCAAGAAAAAGGCAGGTGAAGGCGTCAGGGTTCTGATGCTTGTTTGGGATGATAGAACATCGGTGAATTTGTTGAAAAAAGATGGATTGATGGCTACTCATGATGAAGAAACTGCGCAGTTCTTCGAAGGCACTGATGTGCACTGTGTTTTATGCCCCCGCAATCCTGATAATGGCGGTAGCATTGTTCAAGATTTACAAATTTCTACCATGTTTACTCATCACCAGAAGATTGTGGTGGTGGATAGTGAGTTGCCAAGTGGAGCGTCAGATAGGCGAAGAATTGTGAGTTTTGTTGGAGGTATTGACCTCTGTGATGGAAGATATGATACAGCCTTCCACTCACTTTTCCGAACCCTTGACACAGTACACCATGATGATTTTCATCAGCCTAACTTCCCGGGTGCTGATATCACAAAAGGTGGTCCTAGGGAACCATGGCATGACATCCACTCTCGGCTTGAAGGACCCATAGCATGGGATGTTTTGTTTAACTTTGAGCAGAGATGGAGGAAACAAGGTGGTAAGGATTTACTCGTTTCACTGAGAGAGCTTGAAGATGTCTTTATTCCCCCATCCGCAGTAACATTTCCCGAGGATCATGAGACATGGAATGTTCAGTTATTTAGATCTATTGATGGTGGTGCTGCTTTTGGGTTCCCAGACACTCCTGAAGAAGCTGCTAGAGCCGGATTGATTAGTGGTAAGGATAATATCATCGATCGGAGTATTCAAGATGCTTATATTAATGCTATTCGGCGTGCAAAGAACTTCATCTATATTGAAAATCAGTATTTCCTTGGAAGCTCCTTTGCCTGGGCTCCTGAAGATATTAAGCCGGAAGATATCGGTGCTTTGCATTTAATCCCAAAGGAACTTTCACTTAAGATTGTGAGTAAGATTGAAGCTGGGGAAAGGTTCACAGTGTATGTTGTGGTCCCGATGTGGCCGGAGGGTGTCCCGGAAAGTGCATCAGTTCAGGCAATATTGGACTGGCAAAGAAGAACACTCGAGATGATGTACAAGGATGTTGTTCAGGCACTCAGGGCTAAGGGAAGTGATGAAGATCCTAGGAACTATTTGACATTCTTCTGCCTCGGTAATCGTGAAGTGAAGAAACAAGGTGAGTATGAGCCTTCAGAAAAACCAGAAGAGGATTCAGATTATCAAAGAGCCCAAGAAGCTCGGCGCTTCATGATTTATGTTCATACCAAGATGATGATAGTTGATGATGAATACATAATCGTTGGATCTGCCAACATCAACCAGAGATCAATGGATGGTGCTAGGGACTCTGAGATCGCGATGGGTGCTTATCAGCCGTATCACTTGGCTACTAGGCAGCCTGCACGTGGTCAGATTCACGGTTTCCGCATGTCATTGTGGTATGAGCACCTCGGCATGCTTCACGAGTCCTTCGACAACCCTGAAAACGAAGAATGTATTCGTAAGGTGAACCAGATTGCTGACAAGTATTGGGATCTCTACTCTAATGAGTCACTTGAGCGTGACCTTCCCGGCCACCTGCTCCGCTATCCTATCGGTGTTGCCAGCGAAGGTGATATCACTGAATTGCCAGGATTTGAGTTCTTCCCTGATACCAAGGCTCGCATTCTCGGCGGCAAAGTTGACTACATGCCACCAATCCTTACCACTTAA 2436 0.4421 MAQILLHGNLHATIFEVDRLKSEGGGGGGNFLSKIKQNIEEKVGIGKGVTKLYATIDLEKARVGRTRIIENEENNPKWYESFHIYCGHSASNIIFTVKDDNPIGASLIGRAYVPVGEVLDGEEIDRWVELLDEDKNPIQQGSKIHVKLQYFDVGKDLNWARGIRSAKFPGVPYTFFSQRQGCKVTLYQDAHVPDNFVPKIPLSGGKNYEPHRCWEDIFDAITNAKHMIYITGWSVYTEISLVRDSRRPKQGGDVTLGELLKKKAGEGVRVLMLVWDDRTSVNLLKKDGLMATHDEETAQFFEGTDVHCVLCPRNPDNGGSIVQDLQISTMFTHHQKIVVVDSELPSGASDRRRIVSFVGGIDLCDGRYDTAFHSLFRTLDTVHHDDFHQPNFPGADITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDLLVSLRELEDVFIPPSAVTFPEDHETWNVQLFRSIDGGAAFGFPDTPEEAARAGLISGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFAWAPEDIKPEDIGALHLIPKELSLKIVSKIEAGERFTVYVVVPMWPEGVPESASVQAILDWQRRTLEMMYKDVVQALRAKGSDEDPRNYLTFFCLGNREVKKQGEYEPSEKPEEDSDYQRAQEARRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGAYQPYHLATRQPARGQIHGFRMSLWYEHLGMLHESFDNPENEECIRKVNQIADKYWDLYSNESLERDLPGHLLRYPIGVASEGDITELPGFEFFPDTKARILGGKVDYMPPILTT* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0547 811 Pfam Phospholipase D Active site motif 329 367 IPR001736 GO:0003824
Lan5g0547 811 Pfam Phospholipase D Active site motif 658 684 IPR001736 GO:0003824
Lan5g0547 811 PIRSF PLD_plant 1 811 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Lan5g0547 811 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 42 153 IPR035892 -
Lan5g0547 811 CDD C2_plant_PLD 2 151 - -
Lan5g0547 811 Pfam Phospholipase D C terminal 730 800 IPR024632 -
Lan5g0547 811 Gene3D Endonuclease Chain A 203 445 - -
Lan5g0547 811 SUPERFAMILY Phospholipase D/nuclease 155 444 - -
Lan5g0547 811 SMART pld_4 329 367 IPR001736 GO:0003824
Lan5g0547 811 SMART pld_4 657 684 IPR001736 GO:0003824
Lan5g0547 811 ProSiteProfiles C2 domain profile. 1 128 IPR000008 -
Lan5g0547 811 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 329 367 IPR001736 GO:0003824
Lan5g0547 811 SMART C2_3c 9 127 IPR000008 -
Lan5g0547 811 CDD PLDc_pPLDalpha_2 495 704 - -
Lan5g0547 811 SUPERFAMILY Phospholipase D/nuclease 453 740 - -
Lan5g0547 811 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 657 684 IPR001736 GO:0003824
Lan5g0547 811 PANTHER PHOSPHOLIPASE D 2 811 IPR015679 -
Lan5g0547 811 PANTHER PHOSPHOLIPASE D 2 811 - -
Lan5g0547 811 Gene3D Endonuclease Chain A 484 703 - -
Lan5g0547 811 Gene3D C2 domain 8 159 IPR035892 -
Lan5g0547 811 Pfam C2 domain 42 130 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0547 Lan-Chr5 10993889 10997957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0547 1 811 Phospholipase D Gene Family (Wang group) AT3G15730 82.389 0.0 1414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0547 K01115 - gmx:100786410 1538.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2065 6 31298982 31303199 Lan5g0547 5 10993889 10997957 PCT
Lan5g0547 5 10993889 10997957 Lan6g2065 6 31298982 31303199 PCT