Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0515 ATGGCTAGACCCCAACAACGGTATAGAGGTGTTCGCCAAAGACATTGGGGTTCTTGGGTCTCTGAAATTCGCCACCCTGTATTGAAGACTAGAATATGGTTAGGAACCTTTGAAACAGCAGAAGATGCAGCTAGAGCATATGATGAAGCAGCAAAGCTAATGTGTGGTCCGAAAGCAAGAACCAATTTTCAACAAAACCCAAATGGATCATCACAATCATCTTCATCATCATCATCATCGAACTTATTATCTGCAACTTTAACAGCCAAGTTACACAAGTGTCACATGGCTTCTCTTTCCCTTCAAATGGCTAAGCAAAAACAGCCACAAAAGGAGCCTCAAAAAGCATCATCATCACTAAGGTTCAATTCATTGTTTAACCCTAGCAATAATAATAGTAATAATGCTATTGTTGGAACAAGTGGTGAGAGTGGTTTTAGATGGGTAGAAGGGAATAATATTAATTGGGTTGGTGTAGAAGGTCAAGTTGAAGTTTCACAGCAACAATTTCAGCAGGTTCTTGAAGATGATCACATAGAGCAAATGATACAAGAGTTGCTTGATTATGGGTCAATTGAGCTTTGTGGCTCAGCTTAG 597 0.397 MARPQQRYRGVRQRHWGSWVSEIRHPVLKTRIWLGTFETAEDAARAYDEAAKLMCGPKARTNFQQNPNGSSQSSSSSSSSNLLSATLTAKLHKCHMASLSLQMAKQKQPQKEPQKASSSLRFNSLFNPSNNNSNNAIVGTSGESGFRWVEGNNINWVGVEGQVEVSQQQFQQVLEDDHIEQMIQELLDYGSIELCGSA* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0515 198 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 196 - -
Lan5g0515 198 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Lan5g0515 198 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Lan5g0515 198 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Lan5g0515 198 MobiDBLite consensus disorder prediction 59 79 - -
Lan5g0515 198 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Lan5g0515 198 PANTHER ETHYLENE RESPONSE FACTOR 1 196 - -
Lan5g0515 198 MobiDBLite consensus disorder prediction 102 134 - -
Lan5g0515 198 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Lan5g0515 198 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Lan5g0515 198 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Lan5g0515 198 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0515 Lan-Chr5 10580748 10582413 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0515 1 195 AP2-EREBP Transcription Factor Family AT5G25190 58.462 7.05e-70 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan5g0515 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0515 - - gmx:100777851 233.802