Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0510 ATGGAAGATCAAGAACACTCACATGACTCAACTTCTCATATTCTACTAGAGCCAAGTCTCTATAGCAAAGATTCCAGTGATGACTCAAAGCTAGAACTCAATCTTCTCAATTCTTTCCATACAAATTTATCTGAAAACTCCTCAGAATATAGTCATTGTAATGAACAAGAGGCAAGGACTTTTTCATGCAACTATTGCCAAAGAAAGTTTTATAGTTCACAGGCACTTGGAGGACACCAAAACGCGCATAAGCGCGAAAGAAATTTCGCAAGAAGAGGATACAGAATTGGTGCTGCTGCTGAAGTTTCTGTAGATTTTGGACATAGCTACTCCACCATGGCTTCTATGACTTCACATGGCTTGTATAACAAACCTCTTGGAATTCAGGTGCATTCTATGATCAACAAAACTTCTTATCAAACACCCTCTTTCGGGTCGAAGAGGCGTGTTTCGGATTCACAATCAGCAACTGAAAAGTTTGCATATGGGAATTTTCATGTTGGAACAGAAACTGGATCATACTTGGCTAGTGGCATTCCAAGATTAGAGAACTTTTCTAATAGGCTGGTGAGTGAAGGATTTGAAGATTGGTTTGGCAGCATTACCTATATGAAGTCTAGACAAGAAAAGTTGCAGCAAAAGCTTGATTTGTCCCTTAAGCTCTAA 666 0.3919 MEDQEHSHDSTSHILLEPSLYSKDSSDDSKLELNLLNSFHTNLSENSSEYSHCNEQEARTFSCNYCQRKFYSSQALGGHQNAHKRERNFARRGYRIGAAAEVSVDFGHSYSTMASMTSHGLYNKPLGIQVHSMINKTSYQTPSFGSKRRVSDSQSATEKFAYGNFHVGTETGSYLASGIPRLENFSNRLVSEGFEDWFGSITYMKSRQEKLQQKLDLSLKL* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0510 221 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Lan5g0510 221 SUPERFAMILY beta-beta-alpha zinc fingers 58 89 IPR036236 -
Lan5g0510 221 Gene3D Classic Zinc Finger 38 104 - -
Lan5g0510 221 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 88 IPR013087 -
Lan5g0510 221 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 2 221 IPR044246 GO:0009788
Lan5g0510 221 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0510 Lan-Chr5 10540841 10542016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0510 2 221 C2H2 Transcription Factor Family AT5G10970 38.462 6.30e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan5g0510 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0510 - - gmx:100816861 233.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0510 5 10540841 10542016 Lan9g0603 9 8737858 8739031 LSH