Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0502 ATGGATCCAAAACAAGAACACCAACCTGGTCCTCCTAGTAGTGTAATCTTCAACAAATACGAGATGGGTCGTGTTCTTGGTCAAGGAAACTTTGCTAAAGTGTACTATGGAAGAAACCTTGTAACCAACGAGAGTGTGGCTATAAAGGTGATAAAGAAGGAGAAGTTGAAGAAGGAGAGGTTAGTGAAGCAGATAAAGCGTGAAGTTTCTGTGATGAGGCTTGTGAAACACCCTAACATAGTTGAATTGAAAGAAGTTATGGCCACAAAGACAAAGATTTTCTTGGTTATGGAGTATGTAAAAGGTGGTGAACTTTTCACCAAAGTTAACAAAGGAAAACTCAAAGAAGATGTTGCAAGAAAGTACTTCCAGCAGCTCATAAGTGCAGTTGATTTCTGTCATAGCCGAGGCGTCACGCACCGCGATTTGAAGCCGGAGAATTTGCTCTTAGATGAGAATGAAGAGCTCAAAGTTTCGGACTTTGGTCTCTCTGCTTTGCCAGAACAAAAGCGTTCAGATGGGATGTTGTTAACACCTTGTGGAACACCAGCTTATGTTGCACCAGAAGTGTTGAAGAAAAAAGGGTATGATGGTTCAAAAGCTGATATTTGGTCTTGTAGTGTGATTCTATATGCTTTGGTTTGTGGCTATTTACCCTTTGAAGGTGAGAATGTTATGAGAATTTATAGGAAATCTTTTAGAGCTGAATATGAATTACCTGATTGGGTTTCAAATGAAGCTAAGAACTTGATTTCTAAGTTACTTGTTGCTAATCCTGAGAAGAGGTTTTCAATCATTGATATCATGAATGATCCTTGGTTTCAAATTGGTTTCATTAGGCCTATTGCTTTTTCAATGAAAGAATCATATTTTGAAGGTGACATTGATTTCAATGATGATGGTGTTGAGGTGAATAATGAAGTGGAAAAACCTGCTAGACCATTTTACAATGCATTTGAGATCATTTCATCATTGTCTCATGGTTTTGATCTTAGGAGCTTGTTTGAGACAAGGAAGAGGTCACCATCTATGTTTATTTCAAAGTTTTCGGCTTTGGCTGTGTTGGCGAAGCTCGAGGCCGTGGCGAAGAAGCTGAATTTTCGGGTGATTGGGAAGAAGGAATTCATGGTTAGGATGCAGGGGAATAGAGAGGGGAGGAAAGGGAAGCTGGCAATGACGGTTGAAGTGTTTGAGGTGGCGCCGGAGGTGGCAGTGGTGGAGTTTAATATGTCTTCAGGGGACACATTTGAGTACATCAAGTTCTGTGAAGAGGAAGTAAGACCTTCCCTCAAAGACATTGTTTGGACTTGGCAGGGTGGTGATAATAATAATGATTGCCAACAATAA 1347 0.4024 MDPKQEHQPGPPSSVIFNKYEMGRVLGQGNFAKVYYGRNLVTNESVAIKVIKKEKLKKERLVKQIKREVSVMRLVKHPNIVELKEVMATKTKIFLVMEYVKGGELFTKVNKGKLKEDVARKYFQQLISAVDFCHSRGVTHRDLKPENLLLDENEELKVSDFGLSALPEQKRSDGMLLTPCGTPAYVAPEVLKKKGYDGSKADIWSCSVILYALVCGYLPFEGENVMRIYRKSFRAEYELPDWVSNEAKNLISKLLVANPEKRFSIIDIMNDPWFQIGFIRPIAFSMKESYFEGDIDFNDDGVEVNNEVEKPARPFYNAFEIISSLSHGFDLRSLFETRKRSPSMFISKFSALAVLAKLEAVAKKLNFRVIGKKEFMVRMQGNREGRKGKLAMTVEVFEVAPEVAVVEFNMSSGDTFEYIKFCEEEVRPSLKDIVWTWQGGDNNNDCQQ* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0502 448 SUPERFAMILY Protein kinase-like (PK-like) 16 275 IPR011009 -
Lan5g0502 448 ProSiteProfiles NAF domain profile. 311 336 IPR018451 GO:0007165
Lan5g0502 448 Pfam NAF domain 315 369 IPR004041 GO:0007165
Lan5g0502 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Lan5g0502 448 CDD CIPK_C 317 431 - -
Lan5g0502 448 Gene3D Transferase(Phosphotransferase) domain 1 13 314 - -
Lan5g0502 448 PANTHER CBL-INTERACTING PROTEIN KINASE 16 14 445 - -
Lan5g0502 448 Coils Coil 48 68 - -
Lan5g0502 448 Pfam Protein kinase domain 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g0502 448 ProSitePatterns Protein kinases ATP-binding region signature. 26 53 IPR017441 GO:0005524
Lan5g0502 448 SMART serkin_6 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g0502 448 Gene3D Kinase associated domain 1, KA1 315 436 - -
Lan5g0502 448 ProSiteProfiles Protein kinase domain profile. 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g0502 448 PANTHER - 14 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0502 Lan-Chr5 10431750 10446442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0502 15 446 CBL-interacting serine-threonine protein kinases AT5G10930 61.364 0.0 554
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lan5g0502 Pkinase 1.4e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0502 - - gmx:100812424 695.656