Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0497 ATGTTTGACAATGGTTACAAGTCACAGTATATTGGTGGCCAAAAGGAGAAGTTTGTAAGGTTGGATGAACTGGATTCTAATTTGTCATTGCCATCTAGCTCAACCGGAATGAAGAAATTAAGATTTAACTTAGATTGTCTTCCTTTTCGTCGTCGCGGAAAAAAAAACACATCAAAATCGTTTAGGCAAGGAGTAAAGAGAGGATCAGATGGACTTGTAACATTGGGAAGATCACTCAGAAGTGGAGTCACTTGGTCAGTGTTCCCTGAAGATCTAAAAGTATCGGAGAGAAAAGTGTTTGACCCTCAAGATAAGAACCTTCTGTATTGGAACAAGTTTTTTGAGCTTCTTTGCATTTTTTCAGTAGCTTGTGATCCTTTCTTGTTTTACCTTCCTTATTTCAACCACAAGTCTTTTTGTCTCGCCATAGATAACAAGCTAGCAAGTTTCTCTGTTACGCTGCGAACATTATTCGATTGTATTTATCTCATCCGAATAAGTTTCCAATTCCGTACTGCTTTCATCGCGCCTTCATCTCGTGTATTCGGAAGAGGTGAACTTGTCATAGATCCTTCACAGATTGCCAAGAGATATTTACAACGTTACTTCATTGTTGACTTCATTTCTGTGCTGCCTATGCCACAGATTATAGTGTGGAAATATCTCTACAAAACAAGACGTGCCGAGGTTTTGGCAACAAAAACAGCACTGTTAAGACTTGTCATCCTGCAATATTTTCCGAGATTTCTACGCTTTCTACCTTTAGCTTCAGAAGTCAAAAAAACAGCTGGTGTTTTTTCTGAAAATGCACTTCTTGGTGCTATGTACTATTTGATTTGGTATATGCTTGCTAGTCATATAACGGGTTCTGTTTGGTACTTACTAGCCATAGAACGGAATGATACATGCTGGAAGCAAGCTTGTGAAGACGTTGGAAATTGCAACATACATTTCTTGTACTGTGGGAGTTCTAACAGGCATATTCCAGGGTATGAAAGTTGGAGAAATATGAGCGAAACCGTTCTTAAAAGTCGCTGCTTTGGTGAGGAAAACACACAATTTAATTATGGAATCTTCAATCAAGCTATACAATCTGGTATTGTTGCTTCTGTAGAAGTCTTTCCTAAATTCTGCTACTGTTTATGGTGGGGCCTTCAAAACTTGAGTACACTTGGTCAGGGGCTTCTAACAAGTACCTACCCTGGAGAGGTTTTGTTTTCCATAGTAATAGCTATTATGGGGCTTGTCCTTTTTTCTCTTCTCATTGGAAACATGCAGACATACCTTCAATCAATGTCAGTTCGTCTCGAGGAAATGAGGATCAAAAGACGCGACTCTGAGCAGTGGATGCATCATCGCTTGCTTCCTCCGGAGCTAAGGGAAAGAGTCAGGAAGTATGATCAATACAAGTGGCTGAATACCCGAGGAGTAGATGAAGAGAACTTGGTTCAGAGTCTTCCAAAAGATCTCAGGAGAGATATTAAACGCCATCTTTGTTTGAATTTGGTCAGAAGGGTGCCTCTCTTTGCTAACATGGAAGAACGCTTGCTTGACGCTATATGTGAGAGATTGAAGCCTAGTTTGTATACCGAAGGCACTTACTTAGTTAGGGAAGGAGATCCAGTTAACGAGATGTTGTTCATCATTCGTGGTCGTCTCGAAAGTGTAACTACAGATGGTGGAAGAAGTGGTTTTTTCAACAGAGGTCTTCTAAAAGAAGGCGACTTCTGCGGTGAAGAGCTACTAACATGGGCACTGGACCCGAAATCCGCAGCTAACTTGCCATCATCTACAAGGACAGTGAAGGCTATAAATGAAGTAGAGGCATTTGCATTGGAAGCAGAAGAGTTGAAGTTTGTTGCTTCACAGTTTAGGCACATTCATAGTAGACAGGTTCAGCACACTTTCCGTTTCTACTCGCAGCAGTGGAGAACATGGGCTGCAATCTTCATTCAAGCTGCATGGAGGAGGCATATGCGGAGGAAAGTCGCGGAACAGCGCAGGAAGGAGGAGGAAGAAGACTTATATGACTCGGACGATAGTGGTAATGATTCTGCAAGAGCCTTATTTCCAAATAGTGAAGGTTCATCATCGAGGAGGTTTGGACTTGGTTCAACCATCTATGCTTCCCGCTTTGCTGCTAATCTTCGTGGTCGTAATCTTCGGGTTTCAAGTTCTTCGGACTTAGCAAAAATCCAAAAGCCTCCAGAACCCGACTTTAGTGCTCTTGAAGATTAA 2238 0.4151 MFDNGYKSQYIGGQKEKFVRLDELDSNLSLPSSSTGMKKLRFNLDCLPFRRRGKKNTSKSFRQGVKRGSDGLVTLGRSLRSGVTWSVFPEDLKVSERKVFDPQDKNLLYWNKFFELLCIFSVACDPFLFYLPYFNHKSFCLAIDNKLASFSVTLRTLFDCIYLIRISFQFRTAFIAPSSRVFGRGELVIDPSQIAKRYLQRYFIVDFISVLPMPQIIVWKYLYKTRRAEVLATKTALLRLVILQYFPRFLRFLPLASEVKKTAGVFSENALLGAMYYLIWYMLASHITGSVWYLLAIERNDTCWKQACEDVGNCNIHFLYCGSSNRHIPGYESWRNMSETVLKSRCFGEENTQFNYGIFNQAIQSGIVASVEVFPKFCYCLWWGLQNLSTLGQGLLTSTYPGEVLFSIVIAIMGLVLFSLLIGNMQTYLQSMSVRLEEMRIKRRDSEQWMHHRLLPPELRERVRKYDQYKWLNTRGVDEENLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMEERLLDAICERLKPSLYTEGTYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKSAANLPSSTRTVKAINEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIFIQAAWRRHMRRKVAEQRRKEEEEDLYDSDDSGNDSARALFPNSEGSSSRRFGLGSTIYASRFAANLRGRNLRVSSSSDLAKIQKPPEPDFSALED* 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0497 745 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 12 742 - -
Lan5g0497 745 CDD CAP_ED 508 639 IPR000595 -
Lan5g0497 745 SUPERFAMILY Voltage-gated potassium channels 102 430 - -
Lan5g0497 745 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 12 742 - -
Lan5g0497 745 SMART cnmp_10 508 639 IPR000595 -
Lan5g0497 745 Gene3D Jelly Rolls 506 626 IPR014710 -
Lan5g0497 745 ProSiteProfiles IQ motif profile. 644 673 IPR000048 GO:0005515
Lan5g0497 745 MobiDBLite consensus disorder prediction 666 698 - -
Lan5g0497 745 MobiDBLite consensus disorder prediction 723 745 - -
Lan5g0497 745 Gene3D Helix hairpin bin 435 499 - -
Lan5g0497 745 Pfam Cyclic nucleotide-binding domain 529 618 IPR000595 -
Lan5g0497 745 ProSiteProfiles cAMP/cGMP binding motif profile. 508 591 IPR000595 -
Lan5g0497 745 SUPERFAMILY cAMP-binding domain-like 438 628 IPR018490 -
Lan5g0497 745 Gene3D - 113 433 - -
Lan5g0497 745 Pfam Ion transport protein 109 435 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0497 Lan-Chr5 10389214 10394404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0497 6 742 Ion Channels AT1G15990 67.824 0.0 999
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0497 K05391 - gmx:100810453 1230.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0497 5 10389214 10394404 Lan9g0594 9 8668829 8674842 LSH