Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0483 ATGATCCTTCAAATCTCCATGCACTACAATAAACATCAACCATACATTATAACCATTACCTTATTCATTCTCTTATTCATGGCTACCATTGTTCAATCTGATAATCCTAAATATAAGGCATGCACACCTCAAAGTTGTGGTAATGGCCCAAACATAAGTTACCCCTTTTGGATTCCTTATCAACAAGATCCTTTTTGTGGCTATCCTAACTTTGAAATCACTTGCAAGAACTATAATCCAATTCTCACAACTTCTAGTTATGACTTTATAGTAAATGATATTTTTTATCCTAACTCTTCAGTTTCTGTGACCAATATTGCTATCTATGAAGATAAGTGTCCTACTCCTATGTATAACTATACCCTTGATCATTCTCCATTTACCTTTAGTTCTGAGAATTCTAATCTCTCTTTCTTCTATAACTGTACAACAGAACCTATAGATTATCCAACATATGATTTAGACTGTGCTAAAAATGCTACACATTATTCTTTTGCTGTTTTTCATAAGGAGGCATTGGAGCATAAAAACTACTCCTTGAATGAGTGTCAGTTTATGGTTAATGTGCCATTGAACATGAATGCTAATGTTAACTTCACAAGTTTGTTGAGAATGAATTACACTGAGATTTTGAAGATGGGGTTTCTTTTGAACTGGACTGCACCTGATTGCAAGTATTGTGAGAAAAGTGGTGGAAGGTGTGGATTTGATGGTGATATGTTCCTCTGCTTCTGCAAGGATAAGACTTACCTTAAAAGTTGTGGACATGGCAATCCATTGAATTTGAAAAGGAAAATTGCTATAGGTGTTGGTGCTGTTGTGTTTGGAGTATTTGTAGTGATTATAGCCATTTATTTCTATCAACTCCGAAAGAAGAATGATTACACTGTGTCACATATACAATCTCAGAGTTTCTCTACTTCTGATCCATCTTTAGTAAAAGACCCTGAGAATAAGGGAAGTCAGTACTTTGGAGTCCATGTTTTCACCTATGATGAACTTGAAGAAGCCACAAACAACTTCGACTCGGCCAGAGAATTAGGAGATGGGGGCTTTGGGACAGTGTATTATGGCCAACTCCGTGATGGGCGTTGTGTTGCAGTGAAGAGGTTGTATGAGAACAATTACAGGAGAGTTGCGCAATTCATGAACGAAGTTGAGATCTTAACTCGCCTTCACCATCCAAATCTCGTGTCTCTATTCGGATGCACTTCTCACCGCAGCCGTGAACTTCTTCTTGTATATGAATACATTTCTAATGGAACAGTTGCCGATCATCTCCATGGTAGAAAAACCAAACCTGGTGCACTACCCTGGCATATTAGAATGCAAATTGCTATTGACACTGCAAGTGCATTGAAATATCTTCATGCTTCTGACATCATCCACAGAGATGTGAAAACCAATAACATTCTTCTTGATGATCACTTTTGTGTCAAAGTAGCTGATTTTGGCCTATCGCGCCTTTTCCCGATCCATGTTACTCATATTTCAACAGCTCCACAAGGGACTCCGGGTTATGTGGACCCTGAGTACCATGAGTGTTACCAACTTACTAATAAAAGTGATGTATATAGCTTTGGGGTAGTGTTGATTGAACTTATATCATCCTTGCCTGCTGTTGATATCACAAGGCATAGGCATGAAATCAATTTATCAAACATGGCTATGAACAAGATTCAAAATCAAGCACTGCATGAACTAGTGGATCCAAAACTTGGGTTTGAATCAGATTTCAAAGTAAGGAAAATGGTAAATGGTGTATCTGAGTTAGCATTTAGGTGCTTGCAGAGTTCCAAAGATATGAGACCTTCTATGGAAGAAGTAGTGGAAATTCTCTTGGATATACAAAGTTATGGCCAGCATAAAAAAAGCCAACCTGAGGTGTTGGATATCTCAGCAAATGATGATGTTGTGTTGCTCAAGGATGATCCACCTCCTCCATCGCCGGATTCGAATGCCGCGAGTAAATCGACAACACCAAATGCTAGTGGATAA 1998 0.3829 MILQISMHYNKHQPYIITITLFILLFMATIVQSDNPKYKACTPQSCGNGPNISYPFWIPYQQDPFCGYPNFEITCKNYNPILTTSSYDFIVNDIFYPNSSVSVTNIAIYEDKCPTPMYNYTLDHSPFTFSSENSNLSFFYNCTTEPIDYPTYDLDCAKNATHYSFAVFHKEALEHKNYSLNECQFMVNVPLNMNANVNFTSLLRMNYTEILKMGFLLNWTAPDCKYCEKSGGRCGFDGDMFLCFCKDKTYLKSCGHGNPLNLKRKIAIGVGAVVFGVFVVIIAIYFYQLRKKNDYTVSHIQSQSFSTSDPSLVKDPENKGSQYFGVHVFTYDELEEATNNFDSARELGDGGFGTVYYGQLRDGRCVAVKRLYENNYRRVAQFMNEVEILTRLHHPNLVSLFGCTSHRSRELLLVYEYISNGTVADHLHGRKTKPGALPWHIRMQIAIDTASALKYLHASDIIHRDVKTNNILLDDHFCVKVADFGLSRLFPIHVTHISTAPQGTPGYVDPEYHECYQLTNKSDVYSFGVVLIELISSLPAVDITRHRHEINLSNMAMNKIQNQALHELVDPKLGFESDFKVRKMVNGVSELAFRCLQSSKDMRPSMEEVVEILLDIQSYGQHKKSQPEVLDISANDDVVLLKDDPPPPSPDSNAASKSTTPNASG* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0483 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Lan5g0483 665 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 16 656 - -
Lan5g0483 665 ProSiteProfiles Protein kinase domain profile. 341 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g0483 665 Gene3D Transferase(Phosphotransferase) domain 1 418 629 - -
Lan5g0483 665 Pfam Protein tyrosine and serine/threonine kinase 344 613 IPR001245 GO:0004672|GO:0006468
Lan5g0483 665 Gene3D Phosphorylase Kinase; domain 1 313 417 - -
Lan5g0483 665 SMART serkin_6 341 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g0483 665 Pfam Wall-associated receptor kinase galacturonan-binding 41 104 IPR025287 GO:0030247
Lan5g0483 665 Pfam Wall-associated receptor kinase C-terminal 162 248 IPR032872 -
Lan5g0483 665 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524
Lan5g0483 665 MobiDBLite consensus disorder prediction 634 665 - -
Lan5g0483 665 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 16 656 IPR044652 -
Lan5g0483 665 SUPERFAMILY Protein kinase-like (PK-like) 322 621 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0483 Lan-Chr5 10249095 10252290 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0483 223 665 Receptor kinase-like Gene Family AT1G25390 53.829 9.04e-151 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Lan5g0483 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0483 - - mtr:MTR_6g083020 948.347