Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0478 ATGCCACTCTTCTCATTTATATCTCACTGTTTCCTCCCTAACGGAAGTCGTAACCACCCAATCGCTTCTGAGGTGAAGGGTAGCAAATTGGTGCCGGTGGATTCTGAGGGTTCAATTAGTGTTGATGATCAGCATGTGCTTGTTGGTTCTAAGGAACCAAGCAGCTTGGTTGAATCAGTGCCTGTGATATCTGAGTCACCAAGTAGTCGTGGTAAACCACTGTTGGTTGATTTTGAGGTACTGAACAGCGAGTGCCACAGAAGTGAGATATTCAAGTATTCTGAACTTGAAGAAGCCACCGACAATTTTGACACTAGTAGAGTACTTGGAAAAGGAAGTTATGGGACAGTATACTCTGGAATACTTAAAGATGGGCGTCGTGTTGCAATTAAGTGCATGCATCAATTCAAGATGTTAAGATTACATGATGAGAAACTTCATAAAGAGAGACTTAGAAAGTTCATGAATGAAGTTGAGATTTTAACCAGCTTGAGCCATGAAAATCTTGTCCAACTTTATGGTTGCACCTTTCCTCAGGGTAGTGAACTGCTTCTTGTTCAAGAATACATTCCTAGTGGAACAGTTGTTCATCATCTACGTCGTGAAGGCACTCTCACATGGTTTACTCGACTAAAAATTGCAGTACAAACTGCAAGTGCATTGGCTCATCTACATGCTTCCAATATAATCCACCGTGACGTGAAAACCAGTAATATTCTCCTTGACAGTAGTTTGAATGCTAAAGTTGCAGACTTTGGATTGTCACGCCTTATCCCGCACGGTGTTTCACATATTACCACTGATCCTGCTGGGACTCCCGGTTATATTGATCCAGAGTACTATGAACAGTGTCATCTTTCTGATAAAAGTGATGTATATAGCTTTGGAGTAATACTGGTCGAGCTGATATCATCCTTGCCAGCATTTAGCGAGGACGATAAGCAGCCGTATCTTTCAGATTTTGCTACAGATAAAATCCTTTGTGGACATCTCGAAAAGCTCGTTGATCCAGCTCTTGAATTTCAGTCAGATGAGTGGATAAGTGAAACAATTACCGCAGTGGCGGAGTTGGCATTCCGCTGTCTGCAACGCCGAAGAGACATGAGACCTTCTATGGGTGAGGTGTTAAATACCCTTGAGAGCATTAGAAGTGGAACCTCTAAAAGTGCCCTTACTTGGGGTCCTAATAGTACTTACAAAGCTACCAAAGTTCAGATTGTGTCCACCTTGCCTGATGATTATTTTGGGAAGAGATAG 1257 0.4224 MPLFSFISHCFLPNGSRNHPIASEVKGSKLVPVDSEGSISVDDQHVLVGSKEPSSLVESVPVISESPSSRGKPLLVDFEVLNSECHRSEIFKYSELEEATDNFDTSRVLGKGSYGTVYSGILKDGRRVAIKCMHQFKMLRLHDEKLHKERLRKFMNEVEILTSLSHENLVQLYGCTFPQGSELLLVQEYIPSGTVVHHLRREGTLTWFTRLKIAVQTASALAHLHASNIIHRDVKTSNILLDSSLNAKVADFGLSRLIPHGVSHITTDPAGTPGYIDPEYYEQCHLSDKSDVYSFGVILVELISSLPAFSEDDKQPYLSDFATDKILCGHLEKLVDPALEFQSDEWISETITAVAELAFRCLQRRRDMRPSMGEVLNTLESIRSGTSKSALTWGPNSTYKATKVQIVSTLPDDYFGKR* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0478 418 Gene3D Transferase(Phosphotransferase) domain 1 190 398 - -
Lan5g0478 418 SMART serkin_6 103 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g0478 418 Gene3D Phosphorylase Kinase; domain 1 77 189 - -
Lan5g0478 418 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524
Lan5g0478 418 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 71 390 IPR044652 -
Lan5g0478 418 ProSiteProfiles Protein kinase domain profile. 103 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g0478 418 Pfam Protein kinase domain 104 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g0478 418 SUPERFAMILY Protein kinase-like (PK-like) 86 380 IPR011009 -
Lan5g0478 418 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 71 390 - -
Lan5g0478 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0478 Lan-Chr5 10211605 10214758 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0478 90 388 Receptor kinase-like Gene Family AT1G25390 53.922 3.51e-101 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Lan5g0478 Pkinase 2.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0478 - - mtr:MTR_6g082700 546.584