Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0476 ATGCCTATTGCCACTGAACACATGAAATGGAGAAAACATAGAAACAGATTGAGCCAAACCATTTCAGAAACTAATCCAATTCCAAAACCAAACCCAAAAATCTCTTCCAGAATCCAATCCACAAGTTGCAAAAGCAAAACCACAATCTCTTCTCTCCTTCTCTCTACATTCTCCAACAACAACAACACCAAAGAAACAACACATAAGAAGAAAAAGAAGAACACCAATAACACCAACTTTTCTGCAACAACCTTCATTGGGTTTGGTTGCAAGGCCAGTAGTGCATCAAATCATGTGTCAGTTCCATCATTGATTAGATCCTCAGCAGATTGTGAAGAGAATAATAATAAGAAGAAGAAGAGCATAAAGAATAAACATAGAAGAAACAGTGATAAGAACAGTAACAATGATTCTACTACTACTGCTTCTGCTACATGTGTGGATTTTCAAGATGTTTGGTGTGGCCCTGGAATTGGGTTCTCAGTTGATACTGCATCCTCTGTGGATTGTGTTGTGGCAATGAAGAATGTATCTGCAAGAAGGAATCTTGATGTAGAGAAGATAACACATAGGGAGCAGCATCTATCTTATTTGAGAAGGAACACTATAAACACAGAAAGTATCTCAATTATTGATGAATATTCAGACATACTTACACCACGCCCTGGCTTAGAGTCTTTTGCCACTTCCAGATACTATCCTCATGTTCTGCATCCTTCTTCTGATGGTCTTGCTGAGATAATGATACTTCAAGGAAGACTAGTCATGGAGGAACAATTGAATTCACATGACCAATTTAGAGACTGGAGACTTGATGTTGATAACATGTCATATGAGCAACTACTTGAGCTGGGTGAGAAAATTGGTTACGTGAACACTGGACTTGAAGAGGATGAGATGAGACTCAACATAAGGAAACTTAAGCTTGTAATTTCAAATGGTACATTAAAGAATCAAATAGACAAAAAGTGCACCATTTGTCAAGAGGAGTATGAAGGAGGTGAAGAGCTGAGGAGGCTAAATTGTGAACACAGCTATCACTTTCAGTGTATAAAACAATGGCTTGTGCATAAAAACTTCTTCCCTATCTGTAAGCAAGAAGTTGTTGTTCTATACTGA 1119 0.3789 MPIATEHMKWRKHRNRLSQTISETNPIPKPNPKISSRIQSTSCKSKTTISSLLLSTFSNNNNTKETTHKKKKKNTNNTNFSATTFIGFGCKASSASNHVSVPSLIRSSADCEENNNKKKKSIKNKHRRNSDKNSNNDSTTTASATCVDFQDVWCGPGIGFSVDTASSVDCVVAMKNVSARRNLDVEKITHREQHLSYLRRNTINTESISIIDEYSDILTPRPGLESFATSRYYPHVLHPSSDGLAEIMILQGRLVMEEQLNSHDQFRDWRLDVDNMSYEQLLELGEKIGYVNTGLEEDEMRLNIRKLKLVISNGTLKNQIDKKCTICQEEYEGGEELRRLNCEHSYHFQCIKQWLVHKNFFPICKQEVVVLY* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0476 372 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 4 370 - -
Lan5g0476 372 SMART ring_2 324 364 IPR001841 -
Lan5g0476 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 370 IPR013083 -
Lan5g0476 372 ProSiteProfiles Zinc finger RING-type profile. 324 365 IPR001841 -
Lan5g0476 372 SUPERFAMILY RING/U-box 323 370 - -
Lan5g0476 372 MobiDBLite consensus disorder prediction 111 140 - -
Lan5g0476 372 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 4 370 IPR045191 GO:0061630
Lan5g0476 372 MobiDBLite consensus disorder prediction 58 78 - -
Lan5g0476 372 MobiDBLite consensus disorder prediction 22 42 - -
Lan5g0476 372 Pfam Ring finger domain 323 365 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0476 Lan-Chr5 10147504 10164830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0476 6 279 C3H Transcription Factor Family AT1G73760 38.567 5.01e-43 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0476 - - gmx:100818517 370.163