Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0469 ATGGGTATCAAGGATCTTCTCAGATTCATGAAACCTTACATTGAACCTATCCATATCAAGAAATATGCTGGCAAACGCGTGGGTATTGATGCATATTCATGGCTTCACAAGGGTGCTTATTCATGTAGTATGGAGCTTTGTTTGGATTCTGATAGTGAAAGGAAATTGCGGTATATTGAATACTTTATGCATCGGGTCAACATGCTTCGTTACTATAAGATAACTCCGGTTGTTGTTTTTGATGGTGGCAATGTTCCTTGTAAGGCAGCAACTGAGAAAGAGAGGCACAGAAAAAGAAGTGCTAATCGTGAATTGGCAATGGTGAAGCTCCAAGAAGGGAATGTTAATGCAGCTGCAGAACTATTCCAGAGAGCTGTGAATATTACACCCCTAATGGCACATCAACTGATTCAGACTCTGAGGTCGGAGAACATCGAGTTTGTTGTAGCTCCATATGAAGCAGATGCTCAGTTAGCATACATGTCTAATCTTGAAACACAAAAGGGTGGAATTGCAGCAGTAATAACAGAAGATAGTGATCTGATAGCATATGGTTGTTCAGATGTTGTTTTTAAGATGGACCGTAACGGAAATGGTGAAGGAATAGAGTTAGAGCAGGTTTTTGGTGCTGAGTCTACAAAACCTTCGTTTCGGAGTTTTGATATGAAACTTTTCACAGGTATGTGCATCTTAGCAGGCTGTGATTTTCTTCCATCCGTTCCTGGAATTGGTATTGTTCGAGCTCATGCCTTAGTTTCCAAGTATCGGAACCTAGATCGTGTTTTGTCTGTTCTGAAGTTTGAGAAGGGTGACCAAATGCCAGGAGATTACGCCAAATCCTTCAAAGAGGCAGTTGCAGTCTTCGAGCATGCTCGAATATATGATTCCAATACTAAAGAGCTTAAGCACATGAAGCCTCTTCCACATAATTTTCTCGAGACACTTGATGGAAACCTTGATTTCTTGGGACCAGAAATTCCTCCAACTATAGTTGCTGCAATAGCTGAAGGAAACATAAACCCATCTACCAAGAAAGCCTTTGATAAGTTGGAATGTCCTGGACTTTCTCCACAATCTGTTGCTCTCCAACTAAATGGTAAACTCAGGAAAACTGAAGTTCCAGCACCAATTAGGCAAGAAAACTGCTTTGCCGTCTTCGGCTCCAAAACCAGAGAAACGAGTACAGTGACAAAACAGGAGCTGATTTCAGATAAAGACAAGTACTCTGATGAAGCTTTTACACTTCAGAAACTAATCATGCCATTGAGAACAATAGAAAATACCATTTTATCTGATGACACTCCTTTGAAGTTTCCTAACAACAATCCATTTCGGTTACGAAAAGCTGAGGAAATATCTTTGGTTCAGACAGAAAACACAATGGAAAATGTTTCTTTTGTCAATAGTGTAGAATATATTGACTTGTGCATGTCTCAGGATAGCTTTGAAGAGGGGTCTGAAAATATTTCAAGGAAAAGGAAATTTGAAGATATTTGCTTAGATCAACTGCAAACAAGTGATGAACAAATTTCAGGAGTGACTGAAGTGGAAAATTCAGATATTTTATGTTTGACTCAAGGAAGTGTGAGTTCTAAGACAAGGAAAAGTGCCAATTTGAAAGGAAAATATGAAAGTAAGAAAGTATCCAAGAGAAGCAAGTGCAAGAAAACAGTGAGTGGCAATGGAACTATTCTGAATTTCTTTTCTAGAGTGTAA 1716 0.391 MGIKDLLRFMKPYIEPIHIKKYAGKRVGIDAYSWLHKGAYSCSMELCLDSDSERKLRYIEYFMHRVNMLRYYKITPVVVFDGGNVPCKAATEKERHRKRSANRELAMVKLQEGNVNAAAELFQRAVNITPLMAHQLIQTLRSENIEFVVAPYEADAQLAYMSNLETQKGGIAAVITEDSDLIAYGCSDVVFKMDRNGNGEGIELEQVFGAESTKPSFRSFDMKLFTGMCILAGCDFLPSVPGIGIVRAHALVSKYRNLDRVLSVLKFEKGDQMPGDYAKSFKEAVAVFEHARIYDSNTKELKHMKPLPHNFLETLDGNLDFLGPEIPPTIVAAIAEGNINPSTKKAFDKLECPGLSPQSVALQLNGKLRKTEVPAPIRQENCFAVFGSKTRETSTVTKQELISDKDKYSDEAFTLQKLIMPLRTIENTILSDDTPLKFPNNNPFRLRKAEEISLVQTENTMENVSFVNSVEYIDLCMSQDSFEEGSENISRKRKFEDICLDQLQTSDEQISGVTEVENSDILCLTQGSVSSKTRKSANLKGKYESKKVSKRSKCKKTVSGNGTILNFFSRV* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0469 571 SUPERFAMILY PIN domain-like 2 235 IPR029060 -
Lan5g0469 571 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 220 349 IPR036279 -
Lan5g0469 571 Gene3D - 218 291 - -
Lan5g0469 571 CDD PIN_EXO1 1 208 IPR044752 GO:0046872
Lan5g0469 571 SMART HhH_4 222 255 IPR008918 GO:0003677|GO:0003824
Lan5g0469 571 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 1 566 - -
Lan5g0469 571 SMART xpgineu 141 210 IPR006086 GO:0004518
Lan5g0469 571 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 566 IPR006084 -
Lan5g0469 571 ProSiteProfiles TPR repeat profile. 99 132 IPR019734 GO:0005515
Lan5g0469 571 CDD H3TH_FEN1-like 225 295 - -
Lan5g0469 571 Gene3D - 1 212 - -
Lan5g0469 571 Pfam XPG N-terminal domain 1 100 IPR006085 GO:0004518
Lan5g0469 571 Pfam XPG I-region 144 235 IPR006086 GO:0004518
Lan5g0469 571 ProSitePatterns XPG protein signature 2. 144 158 IPR019974 GO:0016788
Lan5g0469 571 SMART xpgn3 1 102 IPR006085 GO:0004518
Lan5g0469 571 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Lan5g0469 571 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Lan5g0469 571 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 140 157 IPR006084 -
Lan5g0469 571 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0469 Lan-Chr5 10080797 10085092 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0469 1 306 Core DNA Replication Machinery Family AT5G26680 23.242 7.22e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0469 K10746 - gmx:100817932 812.757