Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0458 ATGGATCAAAAAGCGTGCGTGGAATCTGTGAAAAATGATTTGGATTTCAAATGTGAGAAGATTGTAGAAGGAGTTGATAAAGTAATTGAGTGCCCCACTCCACAGAAGACGAGTGAACCCTTACCAACCAAATCTAAGGAGGGACAAACTCAGCTTCCAGAGAAGTATAAGGCCATTGCAGATTTGTTTAGTCATGTGACTTGTTCACTTAGATTGTTGCATCTTCGCAAAAAGTCTCCAACATTTCGAAATGTTTGTGCCCAGGTTGAAATTCTGGCCAAGAGAAAATTCTTGGATGCCCATCTTGCACAGATGAAGTATATACTTCCTGAAGGCATACTTATAGAGAAGGTGCTTGTTTATGATAGTAAGAGCTCGTGTATGAAACCAGATATGAATATCACATTGGTATTTGAGGTTGTGGAAGAAAACTATAAAGATTCTGCTGATATGGCTCTTCGACGATATTTTAGCTCTAAGCTGATTGATTTCTTCAAAATGCATCCTGAGGCTACTGATATTCCGGAGGCCATACTTCCAGAACCCTCTAGCAAAAGAACTTGTAGCTTGATTAGTGTGGATTTGCCTGTGAATCCATCAACAACACTTTCATCAACTTCCAGTGAAATTGAGCCGTTTCCAGGGAAATCCCATTTGTGTCCATCTTTTGGCAGACACTTTTCTCAAAAGATGGATTTGTCATGTTTTCCATCATCCGAAACTCCTCTACTATCCAATATGTCTGCTTGCCTGGATAACCAAGAAAATGAAAGCAGTTGTAAGAAAGAATGTGTAGCATCATCTCATCGTTTGAGTAATCCGAATAACGAAGGAGAGCAGCAGGAGTCATTCTCTATTCGTTTTCAACCTAGTGTTATTAATACACCGGTGCATATGATCTCCCCTCCAGATTCTATTAGTGGCATCAGTTCTAAAAGCCCTGATACCAAAGTTGTCTTTTGCACTGATAGTTTAATGACAGAGACACCTGTGCAGTCAGCACCTCAGAGATTGATGCCGACTTCTGATGTTAAGCTTCAGAATGCTACTACCCAAAACTCAATATCATGTTATAAGCCTGCAAAAAGAGTGCTTGACTTCTCACTCACAGAAGGCGATGATGATTTAGACATTAGAGAAGACAAGATAGAATCTAGCAGACATGAATTTGATAGCATTCCTGAACCTAGTAGAGGATGTTCTGAGGATTTCAATTTTTCTGGTTCTGTTGCTCTGCCTCTGGTAGAAGATACATGTCATGAAGGATCTTCATTAATGCTGGATATGGTTAATGTGATTCACTCTATATTTTATTCTCTCAAAAAAACTCCAATCACAAAAGAGGAGCTCTTGCAGAAGATAATTATGAATTGCTTGGATTTTATTGAGATTAGAGAAGTTGAAGAACAGCTAGAGATCCTGGAAAAGTTGGTGCCAGACTGGATCTGCAAGAAGTTGGTTCCTTCTGGAGATATTATGTATTGCATCAAGGAAGTTTATGACTTGGACTCAGTTCGAGCAAGGGTTTCAGAAATGTGA 1539 0.3938 MDQKACVESVKNDLDFKCEKIVEGVDKVIECPTPQKTSEPLPTKSKEGQTQLPEKYKAIADLFSHVTCSLRLLHLRKKSPTFRNVCAQVEILAKRKFLDAHLAQMKYILPEGILIEKVLVYDSKSSCMKPDMNITLVFEVVEENYKDSADMALRRYFSSKLIDFFKMHPEATDIPEAILPEPSSKRTCSLISVDLPVNPSTTLSSTSSEIEPFPGKSHLCPSFGRHFSQKMDLSCFPSSETPLLSNMSACLDNQENESSCKKECVASSHRLSNPNNEGEQQESFSIRFQPSVINTPVHMISPPDSISGISSKSPDTKVVFCTDSLMTETPVQSAPQRLMPTSDVKLQNATTQNSISCYKPAKRVLDFSLTEGDDDLDIREDKIESSRHEFDSIPEPSRGCSEDFNFSGSVALPLVEDTCHEGSSLMLDMVNVIHSIFYSLKKTPITKEELLQKIIMNCLDFIEIREVEEQLEILEKLVPDWICKKLVPSGDIMYCIKEVYDLDSVRARVSEM* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0458 512 Pfam DNA replication factor CDT1 like 52 128 IPR014939 -
Lan5g0458 512 PANTHER DNA REPLICATION FACTOR CDT1 4 511 IPR045173 GO:0003677|GO:0030174|GO:0071163
Lan5g0458 512 CDD Cdt1_m 34 187 IPR014939 -
Lan5g0458 512 SUPERFAMILY "Winged helix" DNA-binding domain 48 182 IPR036390 -
Lan5g0458 512 SMART CDT1_2 52 181 IPR014939 -
Lan5g0458 512 Gene3D - 421 512 IPR038090 -
Lan5g0458 512 Pfam DNA replication factor Cdt1 C-terminal domain 427 482 IPR032054 -
Lan5g0458 512 PANTHER EXPRESSED PROTEIN 4 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0458 Lan-Chr5 9917990 9923006 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0458 51 171 Core DNA Replication Machinery Family AT2G31270 44.355 6.34e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0458 K10727 - gmx:100794715 559.681