Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0388 ATGGGTAATTGTTGTGCAACACCTTCCTTTTATAATAAACATAAAAAGAACAAGAAACGAAACCCGTTCGACGATGGAATGAGCAACAACAAGCTTGTGGTGTTGAAGGAACCCACGGGACGTGAGATCGATGCACGTTACGAGTTGGGTGACGAGCTTGGTAGAGGGGAATTCGGAGTAACGTACTTGTGCATTGACAAGGAAACACACGAGCAATTCGCATGCAAATCAATTTCAAAGAAGAAATTGAAAACAGCAATTGATATTGAGGATGTGAGGAGGGAGGTGGAGATAATGAAGCACATGCCTAAGCACCCAAATATTGTGTCATTGAAAGACACTTATGAGGATGACAATGCTGTCCACCTCATCATGGAACTTTGTGAGGGTGGAGAGCTTTTTGATCGCATTGTTGCCAGGGGCCATTATACAGAGCGCGCAGCTGCTGTTGTAACCAGAACTATCGTCGAAGTAGTGCAGATGTGCCACAAACATGGTGTGATACATAGGGATCTCAAACCTGAGAACTTTTTGTTCGGAAACAAGAAGGAAACATCGCCTTTGAAGGCTATTGATTTCGGGTTGTCAATTTTCTTTAAACCAGGTGAAAAGTTTAACGAAATAGTTGGAAGTCCATATTACATGGCTCCTGAGGTGTTAAAGCGAAATTATGGCCCTGAAGTAGATATCTGGAGTGCTGGAGTGATTCTTTATATCTTACTTTGTGGTGTCCCACCTTTTTGGGCAGAAACTGAACAGGGAGTTGCTCAATCAATCATAAGATCCGTTGTTGATTTTAAAAGGGAGCCATGGCCAAAGGTTTCTGATAATGCAAAAGACCTTGTGAAGAAGATGCTTGATCCTGATCCAAAGAGCAGGCTTTCTGCTGAGGAAGTGTTAGATCATCCATGGTTACAAAATGCAAAGAAAGCTCCTAATGTTTCATTAGGAGAAACAGTTAAAGCTAGGCTGATGCAATTTTCTGTAATGAATAAGCTGAAGAAAAGAGCTTTGAGGGTGATTGCAGAGCATTTATCAGTCGAAGAAGTTGCTGGAATAAAAGAGGGATTTGAGCTGATGGATACAAGCAATACGGGCAAGATTAACGTCGATGAACTACGAGTAGGATTGCAAAAGCTAGGCCATACTATTTCTGAGGCAGATGTCCAAATGCTTATGGAATCTGGTGATGCAGACAAAGATGGGTACCTAGATTATGGAGAGTTTGTTGCCATTTCTGTTCATCTAAGAAAGATAGGAAATGACGAACACCTTCACAAAGCCTTTCAATTTTTTGATCAGGACAAAAGTGGGTATATTGAAATTGAGGAGCTACGTAATGCCTTAGTTGATGAAATTGACACAAACAGTGAAGAAGTCATTACTGCAATTATGCATGATGTGGACACCGATAAGGATGGAAGAATTAGTTATGAGGAATTTGCTGCAATGATGAAGGCTGGCACAGACTGGAGAAAAGCATCAAAGCAGTATTCGCGAGAAAGATTTACAAGCCTAAGTCTGAAATTGATGAAGGATGGCTCATTGCAATCAAACAATGACCACTAG 1569 0.4117 MGNCCATPSFYNKHKKNKKRNPFDDGMSNNKLVVLKEPTGREIDARYELGDELGRGEFGVTYLCIDKETHEQFACKSISKKKLKTAIDIEDVRREVEIMKHMPKHPNIVSLKDTYEDDNAVHLIMELCEGGELFDRIVARGHYTERAAAVVTRTIVEVVQMCHKHGVIHRDLKPENFLFGNKKETSPLKAIDFGLSIFFKPGEKFNEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQSIIRSVVDFKREPWPKVSDNAKDLVKKMLDPDPKSRLSAEEVLDHPWLQNAKKAPNVSLGETVKARLMQFSVMNKLKKRALRVIAEHLSVEEVAGIKEGFELMDTSNTGKINVDELRVGLQKLGHTISEADVQMLMESGDADKDGYLDYGEFVAISVHLRKIGNDEHLHKAFQFFDQDKSGYIEIEELRNALVDEIDTNSEEVITAIMHDVDTDKDGRISYEEFAAMMKAGTDWRKASKQYSRERFTSLSLKLMKDGSLQSNNDH* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0388 522 ProSitePatterns EF-hand calcium-binding domain. 433 445 IPR018247 -
Lan5g0388 522 Gene3D Phosphorylase Kinase; domain 1 49 132 - -
Lan5g0388 522 PANTHER SERINE/THREONINE-PROTEIN KINASE 13 502 - -
Lan5g0388 522 ProSiteProfiles EF-hand calcium-binding domain profile. 420 455 IPR002048 GO:0005509
Lan5g0388 522 ProSitePatterns EF-hand calcium-binding domain. 469 481 IPR018247 -
Lan5g0388 522 Gene3D - 314 489 - -
Lan5g0388 522 Pfam EF-hand domain pair 423 486 IPR002048 GO:0005509
Lan5g0388 522 Pfam EF-hand domain pair 353 412 IPR002048 GO:0005509
Lan5g0388 522 SUPERFAMILY EF-hand 334 511 IPR011992 -
Lan5g0388 522 ProSiteProfiles EF-hand calcium-binding domain profile. 348 383 IPR002048 GO:0005509
Lan5g0388 522 Pfam Protein kinase domain 47 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g0388 522 ProSiteProfiles Protein kinase domain profile. 47 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g0388 522 SMART efh_1 352 380 IPR002048 GO:0005509
Lan5g0388 522 SMART efh_1 388 416 IPR002048 GO:0005509
Lan5g0388 522 SMART efh_1 424 452 IPR002048 GO:0005509
Lan5g0388 522 SMART efh_1 460 488 IPR002048 GO:0005509
Lan5g0388 522 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 32-LIKE 13 502 - -
Lan5g0388 522 CDD STKc_CAMK 46 304 - -
Lan5g0388 522 ProSitePatterns EF-hand calcium-binding domain. 361 373 IPR018247 -
Lan5g0388 522 SMART serkin_6 47 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g0388 522 ProSitePatterns Protein kinases ATP-binding region signature. 53 76 IPR017441 GO:0005524
Lan5g0388 522 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Lan5g0388 522 Gene3D Transferase(Phosphotransferase) domain 1 133 313 - -
Lan5g0388 522 ProSiteProfiles EF-hand calcium-binding domain profile. 384 419 IPR002048 GO:0005509
Lan5g0388 522 ProSitePatterns EF-hand calcium-binding domain. 397 409 IPR018247 -
Lan5g0388 522 SUPERFAMILY Protein kinase-like (PK-like) 46 313 IPR011009 -
Lan5g0388 522 ProSiteProfiles EF-hand calcium-binding domain profile. 456 491 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0388 Lan-Chr5 8270548 8276297 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0388 1 517 EF-hand Containing Proteins AT5G19450 77.652 0.0 861
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lan5g0388 Pkinase 2.4e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0388 K13412 - tcc:18598981 905.975