Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0383 ATGGAGAAAGGTTTGGTGGTAGATGAAAATATGTCCAATTTGACATCTGCATCAAGTGAAATAAGTGCTTCTTCTGGATCCAGGAGTAACACAGTTTCTCTCTATTCTCAATACTCATCCACTTCAACTGATCAAGAACCACTACCCAAAAAGAAGAGAAGTCTTCCGGGCCACCCAGATCCTGAGGCTGAAGTGATAGCCTTAAGTCCCAAGTCTCTCATTGCAACAAACCGTTTTATATGTGAGATTTGTGAGAAAGGGTTTCAAAGAGATCAAAACCTGCAGCTTCATAAAAGAGGGCATAATTTGCCATGGAAGCTAAAGCAAAGAAATAGCAAAGAACCATTAAGAAAGAAAGTATATGTGTGCCCAGAACCAACTTGTGTTCATCATGACCCATCAAGGGCCCTTGGTGACCTCACTGGAATCAAGAAGCATTTTTTCAGGAAACATGGAGAGAAGAAATGGAAGTGTGAGAAGTGTTCTAAGCGTTATGCAGTTCAATCTGATTGGAAAGCTCACTCTAAAATTTGTGGCACCAGAGAGTATAAATGTGATTGTGGAACCCTTTTCTCCAGGAGAGACAGTTTTATCACTCACAGAGCCTTTTGTGATGCTTTAGCACAAGAAAGTGCAGTAGCAAATGTTACAACAATGAATCCTCTTTTGTCCTCTCACACTCAACTTCTTCATAGCCATGACTTTCAAGCACCATCACTAGTGAAAAGAGAACAAGGGTTGTTCAATATTCCAACCTCAGAAATTCCACCATGGTTGGTAGGAGAACCTATCCATAGTCAAGTTTTCAAGCCTTTAGATTTTTCCTTGACACCATTACTCCCTACACATTATGAAAACCCTAACCCTACTACAGTGCTTCCTTCATTCCAACCCAATATTACTACACCTTCTTTGATGCAAAAGGCATCATCACAAATGGGTGCAACAGTAACCAAAACTGCACCTTCTACAGCAATTCTTAGACCCCACTTATTGCAACAGCAGGGTCACGTGCATGAATGTACAACTACAGGTTATAGCTCCTCTTTTATGGCTTCATCTTCACGTGAAGAAATAAGCACTGTTTTCTCTCATGGCTTAACAGCACCTTATGGGAATAAAGCTGCAATGACCTCTGCCAACACTATAGGAACTGATCAAGAATCTTCTCTTTTTCATGATATGATGGGTGGTGGTGGTGGTAGTAGTGGCACTGTTCATAATGCTAGTGGGTTTGATAACTCATCCTTTGAAGAAGCCATGAGGGGAATGTTTAATAATCCACCAAGAGATGATCATAGTAACTTTGAGGAACTTGTTTCCAAATCAGCACAATCTCAGTTTGGTAATAAAAGCAATAAGGGTGTTGGAGTTAGTGCTAATGGTGAAATGACTAGAGATTTTCTTAGTCTTGGAGCATTTTCTCAAAGAGATTTCTTCAATATATCTGGACTTGATCATTTGGATTCTTCATCATATGGCAAGCAAAATCATAATCAAGCGCCTTGGCAAGGCTAA 1518 0.4012 MEKGLVVDENMSNLTSASSEISASSGSRSNTVSLYSQYSSTSTDQEPLPKKKRSLPGHPDPEAEVIALSPKSLIATNRFICEICEKGFQRDQNLQLHKRGHNLPWKLKQRNSKEPLRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAQESAVANVTTMNPLLSSHTQLLHSHDFQAPSLVKREQGLFNIPTSEIPPWLVGEPIHSQVFKPLDFSLTPLLPTHYENPNPTTVLPSFQPNITTPSLMQKASSQMGATVTKTAPSTAILRPHLLQQQGHVHECTTTGYSSSFMASSSREEISTVFSHGLTAPYGNKAAMTSANTIGTDQESSLFHDMMGGGGGSSGTVHNASGFDNSSFEEAMRGMFNNPPRDDHSNFEELVSKSAQSQFGNKSNKGVGVSANGEMTRDFLSLGAFSQRDFFNISGLDHLDSSSYGKQNHNQAPWQG* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0383 505 Gene3D Classic Zinc Finger 134 214 - -
Lan5g0383 505 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 13 484 - -
Lan5g0383 505 MobiDBLite consensus disorder prediction 1 63 - -
Lan5g0383 505 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Lan5g0383 505 MobiDBLite consensus disorder prediction 9 45 - -
Lan5g0383 505 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 101 IPR013087 -
Lan5g0383 505 SMART c2h2final6 79 101 IPR013087 -
Lan5g0383 505 SMART c2h2final6 121 151 IPR013087 -
Lan5g0383 505 SMART c2h2final6 156 176 IPR013087 -
Lan5g0383 505 Gene3D Classic Zinc Finger 75 102 - -
Lan5g0383 505 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 13 484 - -
Lan5g0383 505 SUPERFAMILY beta-beta-alpha zinc fingers 78 176 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0383 Lan-Chr5 7944032 7947582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0383 7 320 IDZ Gene Family AT1G55110 55.325 2.14e-114 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan5g0383 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0383 K25870 - vvi:100257789 511.916