Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0375 ATGGTTTTCCCGGAAAACACCAATTGGCTTTTCGACCATGGATTGATCAACGATACCACTGTCACTGATTCCGCTTTCACCTGGCCCGCTATTCCATCCAACAACAACCGAGCCTTAATCTCACCATGTGGGATCGGCAACATGTATCAAACAACGCATCCATCCTCTAATGTTGGTGTTGAACATGAACTTGAAGGCTCACTTGGGGGTTCTGATCGTCTCAAAGATCCTGGTTGGAAGAAGAGGGGTAGATCTGATTCATGTGCTGGTTCTAGCTCTAAGGCTTGTCGGGAGAAGTTGCGGAGGGATAGACTTAATGACAAGTTTGTTGAATTAGGCTCCATCTTGGAGCCTGGAAGGCCTCCCAAAACAGACAAGTCTGGTATTCTGATTGATGCTGTCCGAATGGTGACACAATTGCGGGGTGAGGCCCAGAAGCTGAAAGACTCGAATTTGAGCCTTCAAGATAAGATTAAAGAGTTAAAGGCTGAGAAGAATGATCTTCGTGATGAGAAGCAGAGGCTCAAGGCAGAGAAAAAGAAGTTGGAGCAACAGGTGAAATCTATGAGTCCACAACCGGGTTTCATGCATCCCCCTCCTGCAATGCCTGCTGCATTTGCTCCACCAGGCCAAGCCACTGGCAACAAGTTGGTGCCATTTATGGCTTATCCAGGAGTTGCCATGTGCCAATTTATGCCACCAGCTGCCGTGGATACTTCACAGGATCATGTCCACCGCTCACCAGTTGCCTAA 753 0.4807 MVFPENTNWLFDHGLINDTTVTDSAFTWPAIPSNNNRALISPCGIGNMYQTTHPSSNVGVEHELEGSLGGSDRLKDPGWKKRGRSDSCAGSSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKSGILIDAVRMVTQLRGEAQKLKDSNLSLQDKIKELKAEKNDLRDEKQRLKAEKKKLEQQVKSMSPQPGFMHPPPAMPAAFAPPGQATGNKLVPFMAYPGVAMCQFMPPAAVDTSQDHVHRSPVA* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0375 250 Gene3D arf6 gtpase in complex with a specific effector, jip4 139 192 - -
Lan5g0375 250 CDD bHLH_AtILR3_like 94 169 - -
Lan5g0375 250 Gene3D - 84 138 IPR036638 GO:0046983
Lan5g0375 250 MobiDBLite consensus disorder prediction 60 93 - -
Lan5g0375 250 Pfam Helix-loop-helix DNA-binding domain 93 140 IPR011598 GO:0046983
Lan5g0375 250 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 89 140 IPR011598 GO:0046983
Lan5g0375 250 MobiDBLite consensus disorder prediction 66 83 - -
Lan5g0375 250 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 92 158 IPR036638 GO:0046983
Lan5g0375 250 SMART finulus 95 146 IPR011598 GO:0046983
Lan5g0375 250 Coils Coil 137 192 - -
Lan5g0375 250 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 250 - -
Lan5g0375 250 PANTHER BHLH TRANSCRIPTION FACTOR 1 250 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0375 Lan-Chr5 7762876 7765662 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0375 1 250 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 62.109 1.95e-100 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan5g0375 HLH 2.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0375 - - ccaj:109815088 324.324