Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0369 ATGGATTCCGTTAAATCAGAATCCGAATCGATGATAACCGTCAACGACAGCAAAGGTGACGTCATCAATGGTTACATCGTTTACACTCGCAGAAAGAGAACCCTTCCTTCGCATAACGGGAATGAAGCGAAGAGAATCAAAATCGAAGAAGAGAAAGTGAATGCAGATGATGGAAATGTTGAAATTGAAGTGAAAAGTGAAGGAGGAGTGTTTGGGGAAAGTGGTGGCTCAATCGAGGTTGAAGTTGTTCAAGACGACGTCGTTATTTGCAGAAGAGGTGTGGAAACCACTCGCGTTGCGCATCGTAATAAGAATGCTATTGTTGTTAATAAGAAACCTTTGACAGTTAAGGAACTCTTCGATACTGGTTTGGTTGATGGAGTTCCAGTTATCTACATGGGTAATAAGAAGGATCAAACATCTGGATTGCGGGGTGTGATTCAAGATGGTGGGATATTGTGTTCATGCAGTATCTGCAACAGACGCAGGGTTATTCCACCCTCCCAATTCGAGATTCATGCGTGTAATACATATAAGAGAGCAACAGAGTATATTTGCCTCGAAAATGGGAAGAGTTTGCTTGAGCTATTGAGAGCATGCAGGACAGCTCCCCTACATACTTTGGAGGCGACGATTCAAAATTTTGTTTGTTCACTGCCTGAAGAGAAATATTTTACTTGCAAAGATTGCAAAGCGTGTTTTCCTTCATCAAGTGGGGGAAGGGTGGGGCATCTATGCTGTTCTTGCTTGGAATCAAGGAAATATTTTACTTGTAAAAGTTGCAAAGCGTGTTTCCCTTCATCAAGTGGGGGAAGGGTAGGGCATCTATGCCATTCTTGCCTGGAATCAAGGAAATCTGAAGACAGTTCTATTAACGCAGTTGGCAAAAGAGTCAGGACTCCTAAAGCAGCATCTGAACTGTGTATCTCTTCAAAAACTAAGAGACACGGGAAGAAAAGGACAATGTCAGCGAAGCTTTCCGTAAAATTGAAGACCGCTCCAATTACTTCAAATTCAAAGTGTCTATCTCCTCGGAATAAGAGTCAGTGGAGGATCACTAAAAAGTATCAGCGATTGCATAAATTACTTTTTGAAGACAATGGACTGCCTGATGGAGCTGAACTAGCATATTATGCACGTGGGCAGAAATTGCTTGAGGGTATCAAAAGGCGCTCTGGAATTTTTTGTGGGTGCTGCAACACTGAGATCAGCCCCTCACAGTTTGAGGTCCATGCTGGCTGGGATTCTCGCAAGAAACCTTATGCATACATTTACACGTCAAATGGTGTTTCACTGCATGAGTTAGCAATATTTCTCTCGAAAGATCGCCAATGCACTGGAAAGTATAAAAATGATTTATGCATTGTTTGTTGGAATGGTGGGAAACTGTTGCAATGTGATGGATGCTCAACGTCATTTCATAAAGAATGTGCATCTCTATCTAGTATTCCGCGTGGTGAATGGTACTGTCAAATTTGCCAAAACATGTTCCACAGTGAAACGTCCTTGGCTCTTAATGCTGATGCTGTGGCAGCTGGAAGGGTTGCGGGAGTTGATCCTATTGAACAGATTGCCAAGAGATGCATTCGTATAGTAAAAGACAATAACATTGAAGCTGAGATTAGTGGATGTGCTTTATGCAGGGGCTCTGATTTCAGCAGATCAGGCTTCGGTCCGCGCACCGTAATATTCTGCGATCAGTGTGAAAAGGAATATCATGTTGGCTGTTTAAGGGATCATAAGATGGCTTATTTGAAGGAATTGCCAGAAGGGAATTGGTTTTGTTGCAATGACTGCTCAAGAATACATTCTAATTTGGAGAATCTCCTGGTTCAGGGGGATGAGAAACTCCCTGAATCTTTCTTACATGTTATAAAGAAGAAGCAAGAAGAAAGATGTTTAGAACCCTTCAATGAGATTGATGTAAGATGGAGACTTCTTAATGGAAAAATTGCTTCTTCTGAAACTAGACCATTGCTTTTGGAGGCTGTGTCAATGTTCCGGGAATGCTTTGATCCTATAGTTGATGCAGCTACTGGACGTGACCTTGTTCCCCCCATGGTTTATGGAAGAAATGTGCAGACTCAGGATTTTGGAGGAATGTATTGTGCATTGTTAATGGTGAATTCATCTGTGGTATCGGCGGGTATGCTTCGAATTTTTGGTGGAGATATTGCAGAACTTCCTTTAGTTGCAACGAGTTTTAAGAACCGTGGAAAGGGCTACTTCCAAACACTGTTTTCCTGCATCGAGAGGCTGCTAGCTTTCTTGAATGTGAAGAACCTTGTGCTACCAGCTTCGGAAGAAGTCGCATCCATATGGACAACTAAATTTGGGTTTAGCATGATGAAACCTGACCAGCTAATCGACTATAGAAGGAACTGCAATCAAATGATGGCATTCAAAGGGACAATTATGCTTCATAAAGTGGTGCCTCCATGTGGGATCATCAATACTCAATCATGA 2466 0.4209 MDSVKSESESMITVNDSKGDVINGYIVYTRRKRTLPSHNGNEAKRIKIEEEKVNADDGNVEIEVKSEGGVFGESGGSIEVEVVQDDVVICRRGVETTRVAHRNKNAIVVNKKPLTVKELFDTGLVDGVPVIYMGNKKDQTSGLRGVIQDGGILCSCSICNRRRVIPPSQFEIHACNTYKRATEYICLENGKSLLELLRACRTAPLHTLEATIQNFVCSLPEEKYFTCKDCKACFPSSSGGRVGHLCCSCLESRKYFTCKSCKACFPSSSGGRVGHLCHSCLESRKSEDSSINAVGKRVRTPKAASELCISSKTKRHGKKRTMSAKLSVKLKTAPITSNSKCLSPRNKSQWRITKKYQRLHKLLFEDNGLPDGAELAYYARGQKLLEGIKRRSGIFCGCCNTEISPSQFEVHAGWDSRKKPYAYIYTSNGVSLHELAIFLSKDRQCTGKYKNDLCIVCWNGGKLLQCDGCSTSFHKECASLSSIPRGEWYCQICQNMFHSETSLALNADAVAAGRVAGVDPIEQIAKRCIRIVKDNNIEAEISGCALCRGSDFSRSGFGPRTVIFCDQCEKEYHVGCLRDHKMAYLKELPEGNWFCCNDCSRIHSNLENLLVQGDEKLPESFLHVIKKKQEERCLEPFNEIDVRWRLLNGKIASSETRPLLLEAVSMFRECFDPIVDAATGRDLVPPMVYGRNVQTQDFGGMYCALLMVNSSVVSAGMLRIFGGDIAELPLVATSFKNRGKGYFQTLFSCIERLLAFLNVKNLVLPASEEVASIWTTKFGFSMMKPDQLIDYRRNCNQMMAFKGTIMLHKVVPPCGIINTQS* 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0369 821 SUPERFAMILY FYVE/PHD zinc finger 450 498 IPR011011 -
Lan5g0369 821 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 697 784 IPR016181 -
Lan5g0369 821 Pfam PHD-finger 454 495 IPR019787 -
Lan5g0369 821 ProSitePatterns Zinc finger PHD-type signature. 454 493 IPR019786 -
Lan5g0369 821 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 440 519 IPR013083 -
Lan5g0369 821 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 252 817 - -
Lan5g0369 821 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 57 254 - -
Lan5g0369 821 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 540 602 IPR013083 -
Lan5g0369 821 ProSiteProfiles Zinc finger PHD-type profile. 451 496 IPR019787 -
Lan5g0369 821 SUPERFAMILY FYVE/PHD zinc finger 535 597 IPR011011 -
Lan5g0369 821 SMART PHD_3 543 600 IPR001965 -
Lan5g0369 821 SMART PHD_3 453 494 IPR001965 -
Lan5g0369 821 Pfam Tify domain binding domain 145 200 IPR032308 -
Lan5g0369 821 Pfam Tify domain binding domain 390 437 IPR032308 -
Lan5g0369 821 PANTHER AUTOIMMUNE REGULATOR 252 817 - -
Lan5g0369 821 PANTHER AUTOIMMUNE REGULATOR 57 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0369 Lan-Chr5 7501967 7511935 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0369 106 818 PHD Transcription Factor Family AT2G36720 50.678 0.0 730
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan5g0369 TDBD 7.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0369 - - gmx:100798276 1121.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1338 4 22243218 22248213 Lan5g0369 5 7501967 7511935 PCT