Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0342 ATGCCAACTGATAATAAACAAGGCCTTGGCACCAGTGAAAATAGAGATGATATCCCAATTCAAAAGGAAAGGGGAATCCAATTACCAATTCATCGTTCCCTTTCAGTTCCTGAGTTTACCAAAGATGAAAATGTACCTGTAGGTGGGATGTTTCGTATTGTTCCAACCACACCAAAATTGGTTGAAAATATAGCCACAACAACTCCAACATCTATACCTGTTGATACTGTTGAAAATGAGGATCGCAGTGAAGATATTCCTGAAGAAGAAGCTGTTTGTAGAATTTGTATCACTGAATTAGGAGAATGTGCTGAAACTCTTAAATTGGAGTGCAACTGCAAAGGTGAACTTTCACTGGCTCACCAAGAATGTGCAGTTAAATGGTTTAGCATTAAAGGTAATAGAATATGTGATGTTTGCAAGAAAGAAGTTCAGAATCTTCCTGTCACTCTTTTACGAGTTCAAACTGTTCGAGAGCGCAGAGGTCAGCAAGCTGAGATTTCTCATTACAGATTTTGGCAGGATGCTCTCATTCTTGTCATTGTCAACATGCTGGCTTACTTTGGCTTTCTTGAGCAGCTTCTTGTATCAAAAATGGGATCTACTGCAGTTGCCATGTCACTCCCATTTTCTTGTATACTAGGTTTTCTTGCAAGTGTGACAGCTACAACAATGGTGAGGAGAAGCACTGTTTGGGTTTATGCAACTGTTCAGTTTGCTCTGGTGGTTCTTACTGGACACATTTTCTACTCATTGGTTCATATACCAGCTGTTCTAGCTATACTACTTGGTACATTCACTGGGTTTGGAGTTGTAATGTGTGGAGCTACTATTCTTGCTGAGATTTTCAAGTTGAGTAGGCGAATAGAGCTTGCTCGGTCGAATCAACAGCCTCGTTCCGAGCACGCGGTACTTCCTAATCAATCATCATCTGCAGAATTTCATCAAGTTCAGACTGATTCTCATTACCCTGAAAGTAATTTGGGATACTCGCCAGCACATGTGATTTGA 1011 0.4045 MPTDNKQGLGTSENRDDIPIQKERGIQLPIHRSLSVPEFTKDENVPVGGMFRIVPTTPKLVENIATTTPTSIPVDTVENEDRSEDIPEEEAVCRICITELGECAETLKLECNCKGELSLAHQECAVKWFSIKGNRICDVCKKEVQNLPVTLLRVQTVRERRGQQAEISHYRFWQDALILVIVNMLAYFGFLEQLLVSKMGSTAVAMSLPFSCILGFLASVTATTMVRRSTVWVYATVQFALVVLTGHIFYSLVHIPAVLAILLGTFTGFGVVMCGATILAEIFKLSRRIELARSNQQPRSEHAVLPNQSSSAEFHQVQTDSHYPESNLGYSPAHVI* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0342 336 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 15 319 - -
Lan5g0342 336 CDD RING_CH-C4HC3_MARCH 93 141 - -
Lan5g0342 336 SMART ringv_2 92 141 IPR011016 GO:0008270
Lan5g0342 336 MobiDBLite consensus disorder prediction 1 22 - -
Lan5g0342 336 SUPERFAMILY RING/U-box 89 144 - -
Lan5g0342 336 Pfam RING-variant domain 93 140 IPR011016 GO:0008270
Lan5g0342 336 PANTHER OS02G0165000 PROTEIN 15 319 - -
Lan5g0342 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 148 IPR013083 -
Lan5g0342 336 ProSiteProfiles Zinc finger RING-CH-type profile. 85 147 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0342 Lan-Chr5 6054209 6061156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0342 79 191 C3H Transcription Factor Family AT2G37950 29.688 1.09e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0342 - - gmx:100787963 412.92