Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0340 ATGGGGAGGAATGGAAATTGGTTTTCATCTGTGAAGAAAGCTCTCAGCCCCGAGCCAAAGGAGAGGAAAGATCAGAAGTCAAGCAAATCAAAGAAGAAATGGTTCGGGAAGCAAAAATTGCAGACTTCAGAGGCATACTCTGAAACTGATAGAGCACCTCCTCTTCCTGCACCTGAGGAGATTATTGTAACTCATGTTGAGAATGAAAACAGTAATGATCACGTTGTTGAAGTTGCAACTGTCGTAGAAGCAGAGGAACTTGTTCTTGCTGTTCAGACAGCAGCTGATAAGGTTCAAGTCACTGCAGTTGATCACCTTACCGGTAAACCGAATGATGAAGTGGCGGCAATGAGGATTCAAACAGCTTTTCGTGGATACATGGCAAGAAGAGCATTGCGGGCTTTAAGGGGGCTGGTCAGGTTAAAGTCACTGATGGAAGGGCAAGTTGTACAACGCCAAACCATTAGTACCCTTCGCTCTATGCAGACTTTTGCTCATTTACAATCTCAGATTTATTCTAGGAGGCTCAGGATGTTAGAGGAGACACAAGCTCTGCAGAAACTGCTCTTACAGAAGCACGCAAAAGAGCTAGAGATCGTGCGGCTTGGGGGGGAATGGGATGACAGTCTACAGTCCAAAGAACAAATTGAAGCAAAGTTACTCTGCAAGTACGAGGCCGCAACAAGAAGAGAAAGAGCACTGGCTTATTCATACTCTCATCAGAAAAATGGGAAGAATTCATCTAGATCTATGAATCCAATGTTCATGGATCCAACCAATCCATCCTGGGGTTGGAGCTGGTTGGAACGATGGACGGCAGCCCGGCCTTGGGAGAGCCATAGTTTGATGGAGAAAGAAAAAAACGACAATTCATCTGTAAAAAGTGCAACCCGTGGCATTACCAGTGCTGAAATCAGCAAATCATTTGCTCGTTTCCAGCTCAATTCTGATAAGCATTCCCCAACCGCCAGCCAAACTCCAGGCTCTCCTAGCTTTCAGTCCCATTCAAATCCTCCCAAGCCGGCTTCTGCGGCACTTGCTAAGAAACTGAAGAAGGCAAGCCCAAAGGACAATTGGGTAATAGATGACGACACCAAAAGCATGGTCAGTGTGCAGTCAGAGCGGTTTCGGAGGCACTCCATTGCAGGGTCAACAATGCGAGATGATGAAAGCCTTGCAAGCTCTCCAGCACTTCCAAGTTACATGGTACCAACTAAATCTGCGAAAGCTAAGTCCAGGATGCAAAGTCCATTAGCCACAGAGAATGGCACCCCTGAGAAGGTGACTGTTGAGACTGCAAAGAAAAGGCTTAGTTTCCCAGCATCACCTGCCAGACCAAGGTGGCATTCCGATCCACGAAAGGTCGGAAGCAGCTTAACTTCCGAAATCACTGTGGGAAATGGTGTGGCTGGTTGA 1416 0.4682 MGRNGNWFSSVKKALSPEPKERKDQKSSKSKKKWFGKQKLQTSEAYSETDRAPPLPAPEEIIVTHVENENSNDHVVEVATVVEAEELVLAVQTAADKVQVTAVDHLTGKPNDEVAAMRIQTAFRGYMARRALRALRGLVRLKSLMEGQVVQRQTISTLRSMQTFAHLQSQIYSRRLRMLEETQALQKLLLQKHAKELEIVRLGGEWDDSLQSKEQIEAKLLCKYEAATRRERALAYSYSHQKNGKNSSRSMNPMFMDPTNPSWGWSWLERWTAARPWESHSLMEKEKNDNSSVKSATRGITSAEISKSFARFQLNSDKHSPTASQTPGSPSFQSHSNPPKPASAALAKKLKKASPKDNWVIDDDTKSMVSVQSERFRRHSIAGSTMRDDESLASSPALPSYMVPTKSAKAKSRMQSPLATENGTPEKVTVETAKKRLSFPASPARPRWHSDPRKVGSSLTSEITVGNGVAG* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0340 471 MobiDBLite consensus disorder prediction 1 56 - -
Lan5g0340 471 ProSiteProfiles IQ motif profile. 112 140 IPR000048 GO:0005515
Lan5g0340 471 PANTHER IQ-DOMAIN 5-RELATED 1 466 - -
Lan5g0340 471 Pfam Protein of unknown function (DUF4005) 388 444 IPR025064 -
Lan5g0340 471 MobiDBLite consensus disorder prediction 316 340 - -
Lan5g0340 471 SMART iq_5 111 133 IPR000048 GO:0005515
Lan5g0340 471 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 466 - -
Lan5g0340 471 MobiDBLite consensus disorder prediction 411 427 - -
Lan5g0340 471 Pfam IQ calmodulin-binding motif 115 133 IPR000048 GO:0005515
Lan5g0340 471 MobiDBLite consensus disorder prediction 316 360 - -
Lan5g0340 471 MobiDBLite consensus disorder prediction 411 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0340 Lan-Chr5 6008884 6014006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0340 1 470 IQD Protein Family AT5G03040 49.791 4.31e-136 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0340 - - gmx:100799058 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0340 5 6008884 6014006 Lan19g0442 19 6137682 6141681 LSH
Lan5g0340 5 6008884 6014006 Lan20g1057 20 11693385 11697048 PCT
Lan20g1057 20 11693385 11697048 Lan5g0340 5 6008884 6014006 PCT