Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0335 ATGTCTGAAGCACCGGCGAGTCCTGGCAGCGGCGGCGGTGGAGGTAGCCATGAAAACGGAGACCATAGTCCTCGCTCCAATCACCGAGAGCAGGATAGGTTCCTTCCTATCGCTAACATAAGCCGAATCATGAAGAAGGTTCTTCCACCTAATGGAAAAATCGCTAAGGATGCTAAGGATACTGTTCAGGAATGCGTCTCTGAGTTCATCAGCTTCGTTACCAGCGAGGCGAGTGATAAGTGCCAGAGAGAAAAGAGGAAGACCATTAATGGCGATGATTTGCTATGGGCAATGGCTACACTAGGCTTTGAGGACTATATTGATCTTCTCAAGATTTACCTCGCCAGATACAGAGAGATTGAGGGTGATACCAAGGGTTCGACCAAGGGAGGAGATGCATCTTCCAGGAAAGATGTTCACCCAAGCCCTAATGCTCAGTTTGCTCATCAAGTTTCTTTCTCACGTCATGGTGTTGATTACACAAATTCTCAGGCTCAACATATGATGCTTCCTTATCAAGACCAGGAATAG 531 0.4727 MSEAPASPGSGGGGGSHENGDHSPRSNHREQDRFLPIANISRIMKKVLPPNGKIAKDAKDTVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDLLKIYLARYREIEGDTKGSTKGGDASSRKDVHPSPNAQFAHQVSFSRHGVDYTNSQAQHMMLPYQDQE* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0335 176 Gene3D Histone, subunit A 20 154 IPR009072 GO:0046982
Lan5g0335 176 MobiDBLite consensus disorder prediction 123 148 - -
Lan5g0335 176 ProSitePatterns NF-YB/HAP3 subunit signature. 65 81 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lan5g0335 176 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 8 164 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lan5g0335 176 PRINTS CCAAT-binding transcription factor subunit A signature 62 80 - -
Lan5g0335 176 PRINTS CCAAT-binding transcription factor subunit A signature 81 99 - -
Lan5g0335 176 PRINTS CCAAT-binding transcription factor subunit A signature 100 118 - -
Lan5g0335 176 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 8 164 - -
Lan5g0335 176 MobiDBLite consensus disorder prediction 1 32 - -
Lan5g0335 176 SUPERFAMILY Histone-fold 31 134 IPR009072 GO:0046982
Lan5g0335 176 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 34 98 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0335 Lan-Chr5 5886114 5889094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0335 1 171 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.414 1.01e-81 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lan5g0335 CBFD_NFYB_HMF 1.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0335 K08065 - gmx:100798667 279.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0335 5 5886114 5889094 Lan20g1051 20 11587799 11591433 PCT
Lan20g1051 20 11587799 11591433 Lan5g0335 5 5886114 5889094 PCT