Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0330 ATGGGTTGGATTCCATGTTCTGGAATTTCAAAAACTAAGAAGAAGATAAAGAAGAAGATGATGGAAGTGAAGGAAAGCATAGTTGATCCAGTTAGAACTACCCCAGGGAAAATGAAGAAGAACACCTCCATGAATTCTAAAGATTCCTCTAAAAATGGGGGGAACACTGATCATATTGCTGCACAAACATTCTCATTCCGTGAATTGGCAGCAGCAGCTAGAAATTTTAGAGCAGAATGTCTTTTAGGCGAGGGTGGCTTTGGTAGAGTATACAAAGGACATTTGGAAAATATTAATCAGATTGTTGCAATTAAGCAACTTGATCGAAATGGGCTACAAGGGAATAGAGAATTCCTTGTTGAAGTGTTGATGTTAAGTCTTCTTCACCACCCCAACCTTGTCAACCTGATTGGTTATTGTGCCGATGGAGATCAAAGGCTTCTAGTTTATGAATATATGCCACTAGGATCCTTGGAAGACCACTTACACGATATTACTCCTAGCAAAAAACGACTTGATTGGAACACAAGAATGAAAATAGCTGCTGGGGCAGCACGAGGATTAGAATATCTACATGACATAGCTAACCCTCCTGTCATTTACCGAGATTTAAAGAGCTCCAACATTTTGCTTGGTGAAGGGTATCATCCAAAGTTATCTGATTTTGGTTTGGCTAAACTTGGGCCAGTTGGAGAAAACACCCACGTATCAACAAGGGTTATGGGTACCTACGGCTATTGTGCTCCCGAGTATGCAATGACAGGTCAACTGACTCTGAAATCAGATGTTTATAGCTTTGGTGTAGTACTTCTGGAAATAATTACTGGAAGGAAAGCTATTGATGATTCAAAATCTGCAAGAGAGAAGAATCTTGTTGCATGGGCCAGACCCTTGTTTAAAGAACGTAGAAAATTTTCACATATGGCTGATCCAATGCTCCAAGGTCAATATCCACCAAGAGGGCTATACCAGGCCCTCGCTGTTGCTGCAATGTGCGTTCAGGAGCAGGCCAATATGCGTCCGGTAATAGCCGATGTAGTCACAGCTTTGAGTTACCTTGCTTCACAAAAATATGACACTGATACATAG 1089 0.4114 MGWIPCSGISKTKKKIKKKMMEVKESIVDPVRTTPGKMKKNTSMNSKDSSKNGGNTDHIAAQTFSFRELAAAARNFRAECLLGEGGFGRVYKGHLENINQIVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDITPSKKRLDWNTRMKIAAGAARGLEYLHDIANPPVIYRDLKSSNILLGEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDDSKSAREKNLVAWARPLFKERRKFSHMADPMLQGQYPPRGLYQALAVAAMCVQEQANMRPVIADVVTALSYLASQKYDTDT* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0330 362 Gene3D Phosphorylase Kinase; domain 1 45 152 - -
Lan5g0330 362 ProSiteProfiles Protein kinase domain profile. 76 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g0330 362 MobiDBLite consensus disorder prediction 31 54 - -
Lan5g0330 362 ProSitePatterns Protein kinases ATP-binding region signature. 82 105 IPR017441 GO:0005524
Lan5g0330 362 SUPERFAMILY Protein kinase-like (PK-like) 58 350 IPR011009 -
Lan5g0330 362 CDD STKc_IRAK 82 350 - -
Lan5g0330 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Lan5g0330 362 SMART serkin_6 76 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g0330 362 Pfam Protein tyrosine and serine/threonine kinase 80 348 IPR001245 GO:0004672|GO:0006468
Lan5g0330 362 Gene3D Transferase(Phosphotransferase) domain 1 153 361 - -
Lan5g0330 362 PANTHER OS07G0668900 PROTEIN 1 361 - -
Lan5g0330 362 MobiDBLite consensus disorder prediction 36 54 - -
Lan5g0330 362 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL7-RELATED 1 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0330 Lan-Chr5 5629088 5632601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0330 40 355 Glycoside Hydrolase AT3G07070 68.671 4.95e-164 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lan5g0330 PK_Tyr_Ser-Thr 6.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0330 - - gmx:100776041 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0330 5 5629088 5632601 Lan20g1044 20 11458656 11461240 PCT
Lan20g1044 20 11458656 11461240 Lan5g0330 5 5629088 5632601 PCT