Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0329 ATGGCGCATCGGCTGCTGAGAGATCACGAAGCCGACGGATGGGAGCGCTCCGATTTCCCCATCATCTGCGAATCCTGCCTCGGTGACAGTCCCTATGTTCGAATGACAAAAGCAGAGTATGACAAAGAGTGCAAGATTTGTACACGGCCTTTTACTGTTTTTAGATGGAGACCTGGCCGGGATGCAAGATATAAGAAGTCTGAGATCTGCCAGACATGTAGCAAATTGAAAAATGTTTGTCAGGTGTGCCTTCTGGATCTTGAATATGGACTACCGGTACAAGTCCGTGATACAGCTCTCAGTATTGATTCTAATGATGCTATTCCCAAGAGTGATGTTAATAGGGAGTATTTTGCAGAAGAGCATGATCGCAAGGCTAGAGCTGGTATAGATTATGAGTCTTCTTATGGTAAAGCACACCCAAATGATACTATTCTGAAGCTTCAAAGGACAACACCATATTACAAAAGAAACCGAGCACATGTTTGCAGTTTCTACATAAGGGGTGAGTGTACTAGAGGAGCTGAGTGCCCTTATAGGCATGAGATGCCAGTAACTGGGGAGTTGTCTCAACAAAATATCAAAGATCGTTATTATGGGGTGAATGATCCAGTGGCATTAAAGCTACTTGGCAAGGCAGGAGAGATGTCCTCTCTGGAGGCTCCCGAGGATGAGAGCATTAAAACTCTTTATGTTGGTGGACTTGATGCAAGGGTCACTGAGCAGGATTTGCGAGATAACTTCTATGCCCATGGTGAAATCGAATCCATCAAAATGGTTCTCCAGCGGGCTTGTGCTTTTGTGACCTATACAACCAGAGAAGGCGCCGAAAAGGCAGCTGAAGAACTCTCCAACAAACTGGTTATCAAGGGCCTAAGGCTAAAGCTGATGTGGGGCAGGCCTCAGTCGGCTAAACCTGAACTGGATGCCTCCGATCAAGCAAGGCAACAGGCATCTGTGGCTCATAGTGGGTTGTTGCCTCGAGCAGTTATATCACAGCAGCAGAGCCAGGACCAGAACCAAGGCATAGTTTACTATGGCAATCCACCTCCTCAACCGGAAAGAAGCTATTACCCATCCATGGATCCTCAAAGAATGGGTGCTCTTGTTACATCTCAAGAGGGTCCTCCCGGGGGACCCTCTGGGTCAGGGGAGAACAAACCCGGTCTGGAGAGGCAGCAAATGCAACATTATGCCCATCCAATGATGCCCCCACCGCCAGGCCAATATCATCATCAGTATCATCCTCCATATGGCCATATGCCACAAGTTCCCCCTTATCAACAACTGTACCCACCACCACCACCATATAATGCTCCGATGCCTCCATCCCAACCACCAGCTATAAATCATCCCTATCAGCATTCTATGCAGCCAGGGTCTTCACAGGCAGGGTCCGGTCAGGGTGGCTCTGCCCCGGTGGAGGCTGGAACGCCGACATCAGGGTCACAGCAGCAGTGA 1461 0.488 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTKAEYDKECKICTRPFTVFRWRPGRDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREYFAEEHDRKARAGIDYESSYGKAHPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMSSLEAPEDESIKTLYVGGLDARVTEQDLRDNFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQSAKPELDASDQARQQASVAHSGLLPRAVISQQQSQDQNQGIVYYGNPPPQPERSYYPSMDPQRMGALVTSQEGPPGGPSGSGENKPGLERQQMQHYAHPMMPPPPGQYHHQYHPPYGHMPQVPPYQQLYPPPPPYNAPMPPSQPPAINHPYQHSMQPGSSQAGSGQGGSAPVEAGTPTSGSQQQ* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0329 486 SUPERFAMILY RNA-binding domain, RBD 213 303 IPR035979 GO:0003676
Lan5g0329 486 MobiDBLite consensus disorder prediction 333 486 - -
Lan5g0329 486 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Lan5g0329 486 MobiDBLite consensus disorder prediction 450 486 - -
Lan5g0329 486 SMART rrm1_1 229 297 IPR000504 GO:0003723
Lan5g0329 486 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 463 IPR039171 GO:0003723
Lan5g0329 486 Gene3D - 212 308 IPR012677 -
Lan5g0329 486 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE 1 463 - -
Lan5g0329 486 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Lan5g0329 486 Pfam Torus domain 133 194 IPR032297 -
Lan5g0329 486 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Lan5g0329 486 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Lan5g0329 486 MobiDBLite consensus disorder prediction 419 449 - -
Lan5g0329 486 CDD RRM_RBM22 227 300 - -
Lan5g0329 486 Gene3D - 148 208 - -
Lan5g0329 486 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0329 Lan-Chr5 5604284 5609374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0329 229 446 Eukaryotic Initiation Factors Gene Family AT2G23350 28.632 2.30e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0329 K12872 - gmx:100779917 788.104