Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0327 ATGGAAGAAACAACAGCAACAATCATAGCTGCACTCTCCACCCTCACATCTTCCCATATCTCAGATCTCACAAACACCATCCTCTCAGCCACCCACCACCACCACCACCGCCTCTCCTTCCTCCTCTCTTCCCCTACCCTTTTTTCTTTAACCCTTCATCATCTCCACAAACTCTCCCTCCATCAAAAGTCCCTCCTCATTGCCCGCCACCTCCTCTCATCCCTCCACCACCTCACCCGCCACCTCATATCATCATCGCCGCCTCCTTTGTCCACTGCCATGAGACAACGTGAGACTGATGCTGTGTTACTACTACTCATGTTCTGTGACACACACAAACACAACCCTGAAGCCTTGGATGCACCCTATTCAGAATGGAGGGTGAACATGTGCAATCTCTACTCTCACACTCTCTTGAACCTTTCTTGTTCTTCATTCATACCCTTTGGGACATGTTTAAGGACAATCTTGATCCCTTATATTGAGATGGTGGCACGGTGCTGGAGGATGGTGGAAGCACTAGGTTGTGGTGGTGGTGGTGGAGGGAAGGAAGTGGGGGAGGTGGCGGCATCTGTGGCGGCAGTGGTTGCTCTTCCGGCGGTGGAGGTGGTTGTTGGTGGTAAAGAATGCGTGATATGCAAAGAGGAGATGAGAATAGGGAGGGATGTGTGTGAATTGCCATGTCAACATTTGTTTCATTGGAGTTGCATATTGCCTTGGTTTGGGAAGAAGAACACGTGTCCTTGCTGCAGGTTCAGGCTACCGTCCGATGATGTCTTTAGAGAGATCCAACGGCTGTGGGAAGTCTTGGTTAAAATGGGTGGGAAAGAATACTTACGACGATGA 846 0.5 MEETTATIIAALSTLTSSHISDLTNTILSATHHHHHRLSFLLSSPTLFSLTLHHLHKLSLHQKSLLIARHLLSSLHHLTRHLISSSPPPLSTAMRQRETDAVLLLLMFCDTHKHNPEALDAPYSEWRVNMCNLYSHTLLNLSCSSFIPFGTCLRTILIPYIEMVARCWRMVEALGCGGGGGGKEVGEVAASVAAVVALPAVEVVVGGKECVICKEEMRIGRDVCELPCQHLFHWSCILPWFGKKNTCPCCRFRLPSDDVFREIQRLWEVLVKMGGKEYLRR* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0327 281 Pfam Ring finger domain 208 251 IPR001841 -
Lan5g0327 281 SUPERFAMILY RING/U-box 205 257 - -
Lan5g0327 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 276 - -
Lan5g0327 281 SMART ring_2 210 250 IPR001841 -
Lan5g0327 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 263 IPR013083 -
Lan5g0327 281 ProSiteProfiles Zinc finger RING-type profile. 210 251 IPR001841 -
Lan5g0327 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC 2 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0327 Lan-Chr5 5539682 5541469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0327 2 272 C3H Transcription Factor Family AT5G02750 49.286 4.98e-76 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0327 - - pvu:PHAVU_007G161400g 281.567