Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0326 ATGCCTCGCTATGATGATAAATATGCCAATACTCGCCTCTATGTGGGTAAGCTGTCATCTAGGACCCGTTCCCGGGATCTGGAGCGAGCCTTCAGCAGATATGGAAGAGTCCAAGATGTGAATATGAAGCAGGATTTTGCCTTTGTTGATTTTAGCGATCCCCGAGATGCTGATGATGCAAGATATCACTTGGATGGCCGTGATTTTGATGGTAGTCGTATTATTGTGGAATTTGCGAAGGGGGCTCCTCGTGGTTCCAGAGAATATCAAGGTAGAGGTCCACCTCCTGGAACTGGCCGCTGCTTTAACTGTGGCCTTGATGGTCATTGGGCCCGAGATTGCAAAGCTGGGGACTGGAAGAACAAGTGCTACCGATGTGGGGATAGAGGTCATATAGAACGAAACTGCAAGAATAGCCCCAAAGAGTTTAGACGTGGACGGAGTTATTCACGTTCACCTGTCAGATCACGCTCTCCTCCTCGGCGTCACAGCCGCAGCTACAGTCGATCCCCTGTTAGAAGAGCACGAAGCCCTGTTCGTGAAGATCGATCAGAGAGCCCTCGCTACAGAAGCCCGGTGACAAATAACAGTCTCCCACCATCCAGGACAAGGAGGCATAGTCCATCACCTGATGATGCCAGCCCACATAAAAGCGATGGTGCATCTCCTAGCAACGGTATCTTGGCCAATAAGCAAGATGGGTCTGACTACAGCAATGGTGGTCGTAGAGAGGGGAGCGGAAGCCCTGCTAGCCCAGCAAGGGATGATGAAGATAGGGACTATACTAGTCCCAAAAACAATGGTAACAGCCGTAGCCCTAGCCCTAGCCCTAGGGATGACAGGAGCCCCATTGAGGACGAGGGTCGTTCGCCAAGAGGAAGTGAGTCAGCTTGA 894 0.5134 MPRYDDKYANTRLYVGKLSSRTRSRDLERAFSRYGRVQDVNMKQDFAFVDFSDPRDADDARYHLDGRDFDGSRIIVEFAKGAPRGSREYQGRGPPPGTGRCFNCGLDGHWARDCKAGDWKNKCYRCGDRGHIERNCKNSPKEFRRGRSYSRSPVRSRSPPRRHSRSYSRSPVRRARSPVREDRSESPRYRSPVTNNSLPPSRTRRHSPSPDDASPHKSDGASPSNGILANKQDGSDYSNGGRREGSGSPASPARDDEDRDYTSPKNNGNSRSPSPSPRDDRSPIEDEGRSPRGSESA* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0326 297 MobiDBLite consensus disorder prediction 278 297 - -
Lan5g0326 297 MobiDBLite consensus disorder prediction 134 149 - -
Lan5g0326 297 SMART rrm1_1 12 77 IPR000504 GO:0003723
Lan5g0326 297 MobiDBLite consensus disorder prediction 134 297 - -
Lan5g0326 297 MobiDBLite consensus disorder prediction 156 170 - -
Lan5g0326 297 SMART c2hcfinal6 100 116 IPR001878 GO:0003676|GO:0008270
Lan5g0326 297 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Lan5g0326 297 SUPERFAMILY RNA-binding domain, RBD 9 100 IPR035979 GO:0003676
Lan5g0326 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 74 IPR000504 GO:0003723
Lan5g0326 297 MobiDBLite consensus disorder prediction 189 204 - -
Lan5g0326 297 MobiDBLite consensus disorder prediction 249 264 - -
Lan5g0326 297 ProSiteProfiles Zinc finger CCHC-type profile. 100 115 IPR001878 GO:0003676|GO:0008270
Lan5g0326 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 81 IPR000504 GO:0003723
Lan5g0326 297 Gene3D - 2 82 IPR012677 -
Lan5g0326 297 ProSiteProfiles Zinc finger CCHC-type profile. 122 138 IPR001878 GO:0003676|GO:0008270
Lan5g0326 297 MobiDBLite consensus disorder prediction 174 188 - -
Lan5g0326 297 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS2Z33 6 281 - -
Lan5g0326 297 SUPERFAMILY Retrovirus zinc finger-like domains 91 139 IPR036875 GO:0003676|GO:0008270
Lan5g0326 297 MobiDBLite consensus disorder prediction 218 245 - -
Lan5g0326 297 Pfam Zinc knuckle 121 138 IPR001878 GO:0003676|GO:0008270
Lan5g0326 297 Pfam Zinc knuckle 100 115 IPR001878 GO:0003676|GO:0008270
Lan5g0326 297 Gene3D - 83 145 - -
Lan5g0326 297 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 6 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0326 Lan-Chr5 5513040 5516358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0326 6 70 Eukaryotic Initiation Factors Gene Family AT2G23350 34.722 4.27e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0326 K12896 - zju:107435609 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0442 9 6702153 6705275 Lan5g0326 5 5513040 5516358 LSH