Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0308 ATGGAAGACATTGATGTTCCACCACTATTTCTCTGTCCCATTTCATTAGAAATCATGAAGGATCCTGTGACAGTTTCTACAGGTATCTCCTACGATAGAGAGAGCATTGAAAAATGGATCTTCTCAGGAAAAAACAAGACTTGTCCAGTCACCAAACAACCCCTCTCAGATTCTATTAACCTCACACCAAACCACACTCTCCGGCGATTGATTCAGGCGTGGTGCACCATCAATGCTTCTCACGGTGTTGAAAGGATTCCAACTCCTAAATCTCCAATCAACAAAACACAGATAGAAAAACTCATCAAAGATGCTTCTCTTTCGCCTCAGTTACAGACTAAATGTCTTGGAAGACTCAAAACCATTGTTTCTGAGAGTGAGGGCAACAAACGCTGCATGGAAGACGCTGGCGCCGTTGAGTTCTTAGCATCAATTGTAATGAACAGCATCGCTTCTTCATCATCTAATAACCAAGATGATGATGTTGATGGTGATGATGATGATGACTGGTTTGATCAGAAAACGGGTGCAGGTGATGAAGCCTTAAGCATACTTTATAATCTTCATTTATCAGAAGCTGGTTTGAAGACTCTCATAGGTTTAAAAAGTGGCGAGTTTATTGATTCATTAACAAGAGTTATGCAGAAGGGTATCTACGATTCAAGAGCATACGCAGTTTTATTGTTGAAATCTATATCTGAAGTTTCTAACCATGTGGATATAGCCAATTTAAGAAATGAATTATTCATTGAATTAGTACAAGTTCTTAAGGACCAGATATCATCCAAGGCTTCAAAAGCAGCACTACTGACACTGATACAACTCACTCCTTGGGGCAGAAACAGGATCAAAGCAGTGGAAGCAGGTGCTATTGCAGTTTTGATAGAACTTCTTCTTGATTCCAATGAAAGAAAGGCTTGTGAAATGATTCTAGTTCTTCTTGAGATGTTGTGCCAAAGTGCTGATGGACGCGCAGAGTTGTTAACCCATGGGGCCGGTTTAGCTATCGTGTCGAAGAAGATCCTTAGGGTTTCAACCATGGCAAATGATAGGGCTGTAAGGATTCTTCTGTCTATTTCTAGATTCTCTCCAACAACAAGTGTTGTTCAAGAAATGCTGCATCTTGGGGTTGTGGCGAAGCTGTGTTTGGTGCTTCAAGTTGATAGTGGGAATAAGACAAAGGAGAAAGCACGAGAGATACTCAAACTTCATGCTCGGTCTTGGAGGAATTCTACTTGCATACCCAGAAATTTGCTTGTTTCTTACCCGTAA 1272 0.408 MEDIDVPPLFLCPISLEIMKDPVTVSTGISYDRESIEKWIFSGKNKTCPVTKQPLSDSINLTPNHTLRRLIQAWCTINASHGVERIPTPKSPINKTQIEKLIKDASLSPQLQTKCLGRLKTIVSESEGNKRCMEDAGAVEFLASIVMNSIASSSSNNQDDDVDGDDDDDWFDQKTGAGDEALSILYNLHLSEAGLKTLIGLKSGEFIDSLTRVMQKGIYDSRAYAVLLLKSISEVSNHVDIANLRNELFIELVQVLKDQISSKASKAALLTLIQLTPWGRNRIKAVEAGAIAVLIELLLDSNERKACEMILVLLEMLCQSADGRAELLTHGAGLAIVSKKILRVSTMANDRAVRILLSISRFSPTTSVVQEMLHLGVVAKLCLVLQVDSGNKTKEKAREILKLHARSWRNSTCIPRNLLVSYP* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0308 423 SUPERFAMILY RING/U-box 3 81 - -
Lan5g0308 423 PANTHER WDSAM1 PROTEIN 1 423 IPR045185 GO:0061630
Lan5g0308 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Lan5g0308 423 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Lan5g0308 423 Pfam U-box domain 6 76 IPR003613 GO:0004842|GO:0016567
Lan5g0308 423 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 423 - -
Lan5g0308 423 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Lan5g0308 423 CDD RING-Ubox_PUB 10 53 IPR045210 -
Lan5g0308 423 Gene3D - 93 414 IPR011989 -
Lan5g0308 423 SUPERFAMILY ARM repeat 211 392 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0308 Lan-Chr5 4792408 4794015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0308 2 423 U-box Gene Family AT3G52450 58.661 1.90e-176 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0308 - - gmx:100809839 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0360 9 5446331 5448207 Lan5g0308 5 4792408 4794015 LSH
Lan5g0308 5 4792408 4794015 Lan19g0349 19 4258325 4259939 LSH
Lan9g0360 9 5446331 5448207 Lan5g0308 5 4792408 4794015 PCT