Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan5g0290 | ATGAGTAAGCTACAGAGTGAAGCATTGAGAGAGGCAATATCTCAGATTGTTACGAATTCAAAGGAGAAAAATCGGAAATTCACTGAGACTATTGAACTTCAGATTGGATTGAAGAACTACGATCCTCAGAAAGATAAGCGTTTCAGTGGTTCTGTTAAGCTTCCTCACATTCCTCGACCTAAGATGAAGATTTGTATGCTTGGTGATGCTCAACATGTCGAAGAGGCAGAAAAAATAGGGCTGGATTACATGGATGTGGAGGCTCTGAAAAAGCTTAATAAAAACAAGAAACTTGTCAAGAAGCTTGCCAAGAAGTACCATGCTTTTCTAGCATCTGAAGCTATCATCAAGCAAATTCCTCGTCTTTTGGGCCCTGGTTTAAACAAGGCAGGTAAATTTCCAACATTGGTGTCTCACCAGGAATCATTGGAGTCAAAAGTTAATGAGACAAAAGCAATGGTGAAGTTTCAACTGAAGAAAGTTCTCTGTATGGGTGTTGCTGTTGGAAATTTGGCAATGGAGGAGAAGCAGATTTTCCAGAATGTACAACTCAGTGTCAATTTCCTTGTCTCATTATTGAAGAAAAACTGGCAAAATGTGAGATGCTTATACGTGAAGAGTACAATGGGGAGTGCAGTCCGTATATTCTAG | 651 | 0.3963 | MSKLQSEALREAISQIVTNSKEKNRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKAMVKFQLKKVLCMGVAVGNLAMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYVKSTMGSAVRIF* | 217 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan5g0290 | 216 | PANTHER | 60S RIBOSOMAL PROTEIN L10A-3 | 2 | 214 | - | - | |
| Lan5g0290 | 216 | PANTHER | RIBOSOMAL PROTEIN L7AE FAMILY MEMBER | 2 | 214 | - | - | |
| Lan5g0290 | 216 | ProSitePatterns | Ribosomal protein L1 signature. | 116 | 135 | IPR023673 | - | |
| Lan5g0290 | 216 | CDD | Ribosomal_L1 | 9 | 215 | IPR028364 | - | |
| Lan5g0290 | 216 | PIRSF | RPL1p_RPL1a_RPL10e_RPL1o | 1 | 216 | IPR002143 | GO:0003723|GO:0003735|GO:0006412|GO:0015934 | |
| Lan5g0290 | 216 | Gene3D | - | 65 | 154 | IPR016095 | - | |
| Lan5g0290 | 216 | Gene3D | - | 19 | 210 | - | - | |
| Lan5g0290 | 216 | Pfam | Ribosomal protein L1p/L10e family | 21 | 210 | IPR028364 | - | |
| Lan5g0290 | 216 | SUPERFAMILY | Ribosomal protein L1 | 11 | 216 | IPR023674 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan5g0290 | Lan-Chr5 | 4102377 | 4105181 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan5g0290 | 1 | 216 | Cytoplasmic Ribosomal Protein Gene Family | AT5G22440 | 89.862 | 1.01e-129 | 362 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan5g0290 | K02865 | - | gmx:100527763 | 390.193 |