Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0282 ATGGAGAAACGAAGGGATGGAAGGAAGAAGTTCCATGAGACTCGACATCCAATCTATAAAGGTGTGAGAAAGAGAAACGGGAAGTGGGTTTGCGAGCTACGAGAACCTAACAACAAAACTCGTGTATGGCTTGGAACATTTGCACATCCAGACATGGCAGCCATAGCCTATGATGTTGCAGCTTTGGCTTTCAAAGGAGACACTGCTTCCTTAAATTTCCCACACTCATCTACCTTGTTGCCACGCCTTAACTCAAAGACCTCTTCCATTAGAGCTATTCAATTTGCTGCAATGGAAGAAGCTCAGAAACATTTCTCCAGAGAGTTGAAACCCAAAGAAATAAGTACTGAAAATGCGTCTGAGTTGTCTTTAGAGGTCGGTTTAGAGGGAGATTCTGGAAGCTTCTTTTGGGATGAAGAAGAAGTGTTTAACATGCCAGGGTTGATGAATAGCATGGCAGAAGGGTTGATTATCACACCACCAGCTTTGCAGAGAGGATTCAATTGGGTTGGTGTGGAAAGTTTTGTGGACTTGACTCTCTGGGGAGACTGA 552 0.4402 MEKRRDGRKKFHETRHPIYKGVRKRNGKWVCELREPNNKTRVWLGTFAHPDMAAIAYDVAALAFKGDTASLNFPHSSTLLPRLNSKTSSIRAIQFAAMEEAQKHFSRELKPKEISTENASELSLEVGLEGDSGSFFWDEEEVFNMPGLMNSMAEGLIITPPALQRGFNWVGVESFVDLTLWGD* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0282 183 CDD AP2 17 76 IPR001471 GO:0003700|GO:0006355
Lan5g0282 183 ProSiteProfiles AP2/ERF domain profile. 18 74 IPR001471 GO:0003700|GO:0006355
Lan5g0282 183 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Lan5g0282 183 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Lan5g0282 183 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Lan5g0282 183 PRINTS Ethylene responsive element binding protein signature 56 76 IPR001471 GO:0003700|GO:0006355
Lan5g0282 183 SMART rav1_2 18 80 IPR001471 GO:0003700|GO:0006355
Lan5g0282 183 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677
Lan5g0282 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 181 - -
Lan5g0282 183 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 7 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0282 Lan-Chr5 3925827 3926390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0282 3 181 AP2-EREBP Transcription Factor Family AT4G25470 46.524 2.79e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan5g0282 AP2 2.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0282 - - aprc:113870892 290.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0282 5 3925827 3926390 Lan19g0401 19 5149161 5150269 LSH
Lan5g0282 5 3925827 3926390 Lan20g1147 20 15501655 15502516 PCT