Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0278 ATGGAGAGTTCACGTAGACCGTTCGATAGATCGAGAGATCAACCCGGTCCGAAGAAGCCTCGGTTAATGGAACAACTCGGGGACCGTGCTTCGAATAATCCCAGTGTTCGATCTTTTCCTCAGCGACAAGTGACTTCTTCTGCATCAAGATTTAGAACAAACGACAGAGATTTGGAAAGAATCAATTTTGATCGCGGTGGTTATCAGCCGCAGCCGTTGGCGCCGCATCAGGAGCTTGTGCATCAGTATAAGACAGCCCTTGCTGAGCTTACTTTCAACTCGAAACCGATTATTACCAACTTGACAATAATTGCAGGGGAGAACCAAATTGCTGCTAAGGCTATTGCTGCTACTGTTTGTGCTAACATTATAGAGGTTCCTAGTGAACAAAAGCTGCCATCTCTATATCTCTTAGACAGTATTGTTAAGAATATTGGGCGGGATTATATAAAATACTTTGCTGGCAGACTACCCGAGGTATTCTGCAAGGTATACCGACAGGTTGATCCTTCTCTTCATCAAAGTATGAGGCATCTTTTTGGAACTTGGAGAGGAGTCTTTCCTCCTCAGACCCTTCAGACTATTGAGAAGGAACTGGGCTTTGCTCCAGCAGTCAATGGTTCTGCTTCCGCATCTGCTACACTTAGGAGTGGTTCACAGTCACTTCCGCCACAAAGCATCCATGTGAATCCCAAGTATTATTTAGAAAGGCAGTGTTTACAGCAGTCTGGCAGGACTAAAGGAGTTGTTGATGATATGACTGGAGCTACTGCAAACTCAAATGAGGATCCAGAAAGGGCGGATAGAGCTTTGGGTGCTGCACGACAATGGAATAATGAGCGCACTTATAGAGATGCATTAAACGACCCTGTTCCGGAAAACAGCATTGTTGCATCCTATGGAGGCAATGAATATGGTTCTGATATTTCAAGGAATTTGGGCTCGGGTATGGGCAGAGCTGGTAGTAGGGTCACTGAGTTAGGACGTGACAAAAGTTCATTGAAATCCAGTAGTGGTGTTGCAGGGACAATATCTGGTAAAAGAAATGGTTTCAGTCTCAGGCATAATTTTTCCAGTACTGAGGCTCATCTTCAGCCAACACAGCAATTTCCTAGCATACAGAACAATGTTATGTCAAGTAGCTGGAAAAATTCTGGTGAAGAGGAGTTCATGTGGGATGAGATGCACTCTGGATTGACTGGTCATGGTGCACCCAAGGCCACGAACAATGGAAGCAAAGACCCTTGTACCAATGATGATGAAAATCTGGAAGTTGAAGATCCCCTCCAAATCCGAAACCCTTTTGGGGGAAATGTTGATATGGAAATATCCACTGAATACCTAGCCACTGATAAACAATTACCTGCATCTCGCCGTCATCCATCATTATCATGGAAATTGCAGGAGCAACACTCAGTTGATGAGTTAGATCAGAAACCTGGTCAATCAGATGGATTTGTGTTCACTCAAGGTTTAAAAGGCAGAACAATTTCCTCTGCTGCCAGGATGGGTAATCGACCTTTCCTGCCAAATGCAACAATAGGATTGGCAGGAACTGTTGTAGAGCAATTTCATTCCATGGGAGCTGAATCCCCCTCTGGGCAGCCACCTTTGGGACAAGAGTCTTCATCACCACCAGCAAGTGTGCACTACCACCCTTATAAAATGCAAGATTTGGCAAAGCAAAACCGTCCCCAGACTCTTAAAACATCTAAATTTTTGGGAGGTCTGCAGAGCCAATATATTAAAGATTCCTTACCTACCCTTCCTTCTAATGATCAGGTTGGTAACTTGCCAAGATCACAGCAAAAGGAGTTGCAAGGTCCATTCTCCTCAACAAAAACCTTTCAGCCACAGCATCCGCAGTTGCTGGGCTCTTCTCACACTGAAGTTATGGCTAAGACTGAGAAGTCACCCTTGTCTAAAGTTTCTCTAGCTATAGAAACTCCAGAGCAGTCAAGCACAAGTAGTATGGAAGATGAAACTGTGAAGAGTGGAATCTTCTCCAACATGCCAATTACTAGGACTCTTCCTACAACTACTCAGGATACAAGGAATTTTCCATCTAAATTAGGGGTTCGGCCTACCCGGTCAGGTGGGCCTTCCCCTGCCAAACTAATTTCTTCTGTGTCTGCAATAACATCACCATCTTCATTAGGTTCTCATAATGATTCTTCATCTGCTCTTCCTGAAGTGCCGCAAAGAAAGTCTGCAAAACTACCAATTGTATCACCTCTGCCACCACCTTCCTCTAATGTCAGCAGCACCTCAGCTCAGACATCAAGTGCTACCAATAATACTGCAAATTCAATTGCTAATCTTTTAAGCTCATTAGTTGCGAAGGGTTTGATTTCAGCAGAAACAGAGTCACCACCAAAGGTAGCATCTAAGATGCAGACTCGATTAGAAGATCAGAGCAAAAGTGTTACGACCAGTAGTTCTTTGCCTGTTGCTTCAGTGTCTGGTTCTGCAGCAGTCCTAGAACCTTCTACCAAAGATAAGGAAGATGATACTGCAAAAACCCCTATATCCCTTTCTGAATCAACCAGCACAGAAATCAGAGATTTTATTGGCTTTGAGTTTAAGCCTCGTCTAATCCGAGAATTGCATCCATGTGTAATTAAAGGATTATTTGATGATCTTCCACATCAATGTAGTGTTTGTGGCCTTAGACTTAAGTTCCAAGAAGAGTTTAATAGACATTTGGAGTGGCATGCCACAAGAGAAGGAGAACAAAATGGTTCAAGAAGATGGTATCTAAAGTCAAGTGATTGGGTTGATGGCAAGGCTTATTATCCATCTGAGCATGAGTGTGCTGATTCTGTAGATGATACCTATAGCGAGGAAGAAGACAAGTGCCAAGAGGATGCAATGGTTCCAGCAGATGAAAACCAATGCTTGTGTGTGTTGTGTGGTGAGCTATTTGAAGATTTTTACTCTCAGGGAAATGGTGAGTGGATGTTTAAAGGGGCTGTTTACATGACTAACTCAGATAGCAATAGTGATTTGGAGATTGGAAATGCGAGTACTGCAAGCGGTCCCGTCATTCATGCAAGATGCTTATCAGAACTTCATATCTAG 3081 0.4349 MESSRRPFDRSRDQPGPKKPRLMEQLGDRASNNPSVRSFPQRQVTSSASRFRTNDRDLERINFDRGGYQPQPLAPHQELVHQYKTALAELTFNSKPIITNLTIIAGENQIAAKAIAATVCANIIEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAGRLPEVFCKVYRQVDPSLHQSMRHLFGTWRGVFPPQTLQTIEKELGFAPAVNGSASASATLRSGSQSLPPQSIHVNPKYYLERQCLQQSGRTKGVVDDMTGATANSNEDPERADRALGAARQWNNERTYRDALNDPVPENSIVASYGGNEYGSDISRNLGSGMGRAGSRVTELGRDKSSLKSSSGVAGTISGKRNGFSLRHNFSSTEAHLQPTQQFPSIQNNVMSSSWKNSGEEEFMWDEMHSGLTGHGAPKATNNGSKDPCTNDDENLEVEDPLQIRNPFGGNVDMEISTEYLATDKQLPASRRHPSLSWKLQEQHSVDELDQKPGQSDGFVFTQGLKGRTISSAARMGNRPFLPNATIGLAGTVVEQFHSMGAESPSGQPPLGQESSSPPASVHYHPYKMQDLAKQNRPQTLKTSKFLGGLQSQYIKDSLPTLPSNDQVGNLPRSQQKELQGPFSSTKTFQPQHPQLLGSSHTEVMAKTEKSPLSKVSLAIETPEQSSTSSMEDETVKSGIFSNMPITRTLPTTTQDTRNFPSKLGVRPTRSGGPSPAKLISSVSAITSPSSLGSHNDSSSALPEVPQRKSAKLPIVSPLPPPSSNVSSTSAQTSSATNNTANSIANLLSSLVAKGLISAETESPPKVASKMQTRLEDQSKSVTTSSSLPVASVSGSAAVLEPSTKDKEDDTAKTPISLSESTSTEIRDFIGFEFKPRLIRELHPCVIKGLFDDLPHQCSVCGLRLKFQEEFNRHLEWHATREGEQNGSRRWYLKSSDWVDGKAYYPSEHECADSVDDTYSEEEDKCQEDAMVPADENQCLCVLCGELFEDFYSQGNGEWMFKGAVYMTNSDSNSDLEIGNASTASGPVIHARCLSELHI* 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0278 1026 MobiDBLite consensus disorder prediction 789 845 - -
Lan5g0278 1026 MobiDBLite consensus disorder prediction 673 764 - -
Lan5g0278 1026 MobiDBLite consensus disorder prediction 1 25 - -
Lan5g0278 1026 MobiDBLite consensus disorder prediction 702 732 - -
Lan5g0278 1026 MobiDBLite consensus disorder prediction 527 551 - -
Lan5g0278 1026 Pfam CID domain 84 194 IPR006569 -
Lan5g0278 1026 MobiDBLite consensus disorder prediction 749 764 - -
Lan5g0278 1026 MobiDBLite consensus disorder prediction 792 826 - -
Lan5g0278 1026 ProSiteProfiles CID domain profile. 75 203 IPR006569 -
Lan5g0278 1026 MobiDBLite consensus disorder prediction 584 622 - -
Lan5g0278 1026 ProSitePatterns Zinc finger C2H2 type domain signature. 885 905 IPR013087 -
Lan5g0278 1026 Gene3D - 73 200 IPR008942 -
Lan5g0278 1026 MobiDBLite consensus disorder prediction 527 547 - -
Lan5g0278 1026 MobiDBLite consensus disorder prediction 1 51 - -
Lan5g0278 1026 MobiDBLite consensus disorder prediction 331 347 - -
Lan5g0278 1026 SUPERFAMILY ENTH/VHS domain 75 204 IPR008942 -
Lan5g0278 1026 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 1 1023 - -
Lan5g0278 1026 MobiDBLite consensus disorder prediction 28 51 - -
Lan5g0278 1026 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 1 1023 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Lan5g0278 1026 MobiDBLite consensus disorder prediction 673 691 - -
Lan5g0278 1026 MobiDBLite consensus disorder prediction 316 347 - -
Lan5g0278 1026 CDD CID_Pcf11 80 192 - -
Lan5g0278 1026 SMART 558neu5 78 200 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0278 Lan-Chr5 3828854 3837913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0278 78 395 C2H2 Transcription Factor Family AT4G04885 39.385 6.88e-53 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan5g0278 CID 1.2e-13 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0278 K14400 - gmx:100788958 1010.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0384 9 5675734 5682424 Lan5g0278 5 3828854 3837913 LSH
Lan5g0278 5 3828854 3837913 Lan8g1181 8 16723491 16730568 PCT
Lan8g1181 8 16723491 16730568 Lan5g0278 5 3828854 3837913 PCT