Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0258 ATGTCCCTAGAAGAGTCACTAAGATCTCTTTCCCTTGACTACCTCAACCTTCTCATCAATGGCCAAGCCTTCGGCGACGTAACCTTCCAAGTAGAGGGCCGTTTGGTCCACGCTCACCGCTGCATCTTGGCAGCAAGAAGCCTCTTCTTCAGGAAATTCTTTTGTGGTCCAGACCCACCATCGGGTCTAGACCCAGTAGTAGGAGAACCCTCTCGAGTTAATTCTGGAGACACTAGGACAACGCCCAGAACCCTGAGCGTCATCCCAATAAACTTGGTGGGATATGAAGTGTTCTTGTTGCTACTACAGTTCCTGTACAGTGGACAAGTCTCTATTGTGCCTCAAAAGCATGAGCCAAGGCCTAATTGTGGGGAGAGAGGATGCTGGCACACGCATTGCTCCTCAGCCGTTGATCTTGCCCTTGATATTCTTGCTGCCTCTAGATACTTTGGGGTTGAACAGCTGGGATTGCTTACGCAGAAACAACTAGCCAACATGGTGAAGAAAGCCTCAATTGAAAATGTCATGAAAGTACTCCTAGCTTCAAGAAAGCAAGAAATGCACCAACTATGGACTACTTGTTCCCATCTTGTTGCCAAGTCAGGTCTTCCACCTGAAGTCCTCGCCAAGCACCTCCCCATTGATATCATCACCAACATCGAAGAGCTTCGTTGCAGCTCTTCAATGCCGCTACACCATCATCATCACCACCACCACCATGACCTCAGCACCGCTGCTGATCTCGAGGACCAGAAAATCCGGAGAATGAGGAGGGCCCTCGAATCCTCCGATGTGGAACTAGTGAAGCTAATGATAATGGGAGAAGGCCTAAACCTTGATGAAGCATTGGCCTTACACTATGCAGTGGAGAATTGTGGCAGAGAAGTTGTGAAAGATTTGCTTGAACTTAGTGCAGCTGATGTCAACTACCGGGCAGGGCCGGCCGGGAAAACCCCGCTCCATGTCGCAGCAGAGATGGTATCGCCAGACATGGTGGCGGTGCTGCTTGACCACCATGCTGACCCTAGTATTAGGACCGTGGATGGTGTAACCCCTCTTGATATGCTCAGAACCCTAACCTCTGATTTCCTCTTTAAAGGTGCTGTCCCAGGACTAACACACATTGAACCTAACAAGCTTAGGTTATGCTTGGAACTTGTTCAATCTGCAGCACTTGTTCTTTCACGTGAAGAGTGCAATGCTAACCCTCCTTCCACAACAGCCATATACCCATTAATGAGTGGAGACCCTAACAGAAGTGGCAACAACAACATTGGTGACCACGACTCCGGCTCTAGGCTGATGTATCTCAACCTGGGTGTCACACATATGAGTGGTGGTGATAGTGGCGACGATGATAACAGTCACAATACTCGTCATGGATCACAAGGTGGTGGATGTAACCCAGCAATGTATCACCACCTCTCTCCAGACTACTAG 1440 0.4917 MSLEESLRSLSLDYLNLLINGQAFGDVTFQVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPVVGEPSRVNSGDTRTTPRTLSVIPINLVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCSSAVDLALDILAASRYFGVEQLGLLTQKQLANMVKKASIENVMKVLLASRKQEMHQLWTTCSHLVAKSGLPPEVLAKHLPIDIITNIEELRCSSSMPLHHHHHHHHHDLSTAADLEDQKIRRMRRALESSDVELVKLMIMGEGLNLDEALALHYAVENCGREVVKDLLELSAADVNYRAGPAGKTPLHVAAEMVSPDMVAVLLDHHADPSIRTVDGVTPLDMLRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREECNANPPSTTAIYPLMSGDPNRSGNNNIGDHDSGSRLMYLNLGVTHMSGGDSGDDDNSHNTRHGSQGGGCNPAMYHHLSPDY* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0258 479 Pfam Domain of unknown function (DUF3420) 202 257 IPR024228 -
Lan5g0258 479 MobiDBLite consensus disorder prediction 443 479 - -
Lan5g0258 479 SMART BTB_4 25 167 IPR000210 GO:0005515
Lan5g0258 479 SUPERFAMILY Ankyrin repeat 267 358 IPR036770 -
Lan5g0258 479 SMART ANK_2a 280 310 IPR002110 GO:0005515
Lan5g0258 479 SMART ANK_2a 315 344 IPR002110 GO:0005515
Lan5g0258 479 Gene3D - 237 363 IPR036770 -
Lan5g0258 479 SUPERFAMILY POZ domain 9 197 IPR011333 -
Lan5g0258 479 PANTHER REGULATORY PROTEIN NPR5 1 474 - -
Lan5g0258 479 Pfam Ankyrin repeats (3 copies) 262 345 IPR002110 GO:0005515
Lan5g0258 479 Pfam BTB/POZ domain 16 115 IPR000210 GO:0005515
Lan5g0258 479 ProSiteProfiles Ankyrin repeat region circular profile. 315 345 - -
Lan5g0258 479 Gene3D Potassium Channel Kv1.1; Chain A 3 200 IPR011333 -
Lan5g0258 479 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 474 IPR044284 GO:0099402
Lan5g0258 479 ProSiteProfiles BTB domain profile. 25 114 IPR000210 GO:0005515
Lan5g0258 479 CDD BTB_POZ_NPR_plant 8 167 - -
Lan5g0258 479 ProSiteProfiles Ankyrin repeat profile. 315 347 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0258 Lan-Chr5 3403066 3406168 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lan5g0258 BTB 1.5e-13 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0258 K14508 - zju:107433767 727.243